RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 HLA-DQA2P01906 255 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ISG15P05161 165 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 UCHL1P09936 223 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 HLA-DOBP13765 273 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF19P17023 458 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MSR1P21757 451 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 PAX7P23759 505 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MYL9P24844 172 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 PTBP1P26599 531 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 S100A5P33763 92 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 OPRL1P41146 370 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 GDI2P50395 445 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF84P51523 738 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 PSMD7P51665 324 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 RIDAP52758 137 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 CAPZA1P52907 286 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 OR12D2P58182 307 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 RPS25P62851 125 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MRPS34P82930 218 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 FABP5Q01469 135 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MELKQ14680 651 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF846Q147U1 533 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 TOMM20Q15388 145 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 C1QTNF12Q5T7M4 302 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ARL9Q6T311 187 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF704Q6ZNC4 412 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 FCRLAQ7L513 359 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF627Q7L945 461 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 SSX6Q7RTT6 188 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 DPY19L4Q7Z388 723 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 LUZP2Q86TE4 346 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 YRDCQ86U90 279 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 GPAT4Q86UL3 456 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 LDLRAD3Q86YD5 345 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 GPR137CQ8N3F9 429 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MAPK1IP1LQ8NDC0 245 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 OR51L1Q8NGJ5 315 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MCFD2Q8NI22 146 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ST7LQ8TDW4 575 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 GHSRQ92847 366 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 FOXRED1Q96CU9 486 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 PIK3IP1Q96FE7 263 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 CMTM3Q96MX0 182 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 TSSK2Q96PF2 358 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 COMMD4Q9H0A8 199 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 C1orf198Q9H425 327 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 PLGRKTQ9HBL7 147 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 EXOSC4Q9NPD3 245 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 AKIP1Q9NQ31 210 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 YAE1D1Q9NRH1 226 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MED29Q9NX70 200 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 MRM2Q9UI43 246 aaKnown RBP6.04□□□□□ -1.44
VPS13A-201ENST00000355766 GNG8Q9UK08 70 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 COPS3Q9UNS2 423 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 FLVCR1Q9Y5Y0 555 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF407Q9C0G0 2248 aa6.04□□□□□ -1.44
VPS13A-201ENST00000355766 DNAJC13O75165 2243 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 MED12Q93074 2177 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TRBV2A0A0J9YWF9 115 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TRBV5-5A0A0J9YX44 114 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 OR4C45A6NMZ5 311 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF814B7Z6K7 855 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF878C9JN71 531 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 H7C1C5 153 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 PDCD5O14737 125 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 DHHO43323 396 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ADH4P08319 380 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 SPARCP09486 303 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 UBCP0CG48 685 aaKnown RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TMIGD3P0DMS9 266 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 CRYGSP22914 178 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 CD79BP40259 229 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 CLDN17P56750 224 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 CLDN20P56880 219 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 LCN6P62502 163 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 GRB2P62993 217 aaKnown RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 HIST1H3AP68431 136 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ECH1Q13011 328 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ALKBH1Q13686 389 aaKnown RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 Q499Y3 187 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TP53I3Q53FA7 332 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TMEM177Q53S58 311 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 DDI2Q5TDH0 399 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 HIST2H3PS2Q5TEC6 136 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 FAM27BQ5VT28 67 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 LIPNQ5VXI9 398 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 C22orf42Q6IC83 251 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 UNQ9370/PRO34162Q6UXP9 181 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 B3GLCTQ6Y288 498 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 HIST2H3AQ71DI3 136 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ABHD12BQ7Z5M8 362 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 KRT77Q7Z794 578 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 YIPF7Q8N8F6 280 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ZIC4Q8N9L1 334 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 C9orf106Q8NAJ2 232 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 OR5M1Q8NGP8 315 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 OR2G2Q8NGZ5 317 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 OR5AK2Q8NH90 309 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 GPR148Q8TDV2 347 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TMEM171Q8WVE6 324 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms