RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ZNF319Q9P2F9 582 aa8.11□□□□□ -1.11
ATG4A-202ENST00000345734 CSAG2Q9Y5P2 127 aa8.11□□□□□ -1.11
ATG4A-202ENST00000345734 AUP1Q9Y679 476 aa8.11□□□□□ -1.11
ATG4A-202ENST00000345734 MGAQ8IWI9 3026 aa8.11□□□□□ -1.11
ATG4A-202ENST00000345734 SSX5O60225 188 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CYTIPO60759 359 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 UBL3O95164 117 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CD2P06729 351 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 TMIGD3P0DMS9 266 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CALCBP10092 127 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 DCTDP32321 178 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 GUCA1AP43080 201 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CX3CR1P49238 355 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 INPP1P49441 399 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 SRP9P49458 86 aaKnown RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 PPIAP62937 165 aaKnown RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 ARG2P78540 354 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 TMEM244Q5VVB8 128 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 AAED1Q7RTV5 226 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 OR51E1Q8TCB6 317 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 THRSPQ92748 146 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 GCDHQ92947 438 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CPNE4Q96A23 557 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 RFT1Q96AA3 541 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 ALKBH3Q96Q83 286 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 DLL3Q9NYJ7 618 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 STEAP1Q9UHE8 339 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 FOXJ3Q9UPW0 622 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 CAMK2AQ9UQM7 478 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 SLC5A6Q9Y289 635 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 KLF13Q9Y2Y9 288 aaPredicted RBP8.1□□□□□ -1.11
ATG4A-202ENST00000345734 PRELID3BQ9Y3B1 194 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 LIPGQ9Y5X9 500 aa8.1□□□□□ -1.11
ATG4A-202ENST00000345734 C5orf63A6NC05 138 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 E9PLN8 166 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 TFECO14948 347 aaPredicted RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 LYRM1O43325 122 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 SYT7O43581 403 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CD3GP09693 182 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CEACAM1P13688 526 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF84P51523 738 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CCL11P51671 97 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 RRADP55042 308 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 SPOCK1Q08629 439 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF124Q15973 351 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 C3AR1Q16581 482 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF766Q5HY98 468 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 LUZP2Q86TE4 346 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 NAA40Q86UY6 237 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 STX12Q86Y82 276 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 LIX1LQ8IVB5 337 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 OR8B12Q8NGG6 310 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 SLC7A6Q92536 515 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 YIPF5Q969M3 257 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 FGGYQ96C11 551 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 FBXO17Q96EF6 278 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CMTM3Q96MX0 182 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 MS4A5Q9H3V2 200 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CRLF2Q9HC73 371 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF275Q9NSD4 429 aaPredicted RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CKLFQ9UBR5 152 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 NUFIP1Q9UHK0 495 aaKnown RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 RCE1Q9Y256 329 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 A0A1B0GTI1 187 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 LEUTXA8MZ59 168 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 KLRC4-KLRK1H3BQV0 150 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 APOC1P02654 83 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF708P17019 499 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 FSTP19883 344 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 HOXA1P49639 335 aaPredicted RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 EFNB2P52799 333 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 SOX8P57073 446 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 RAB11BQ15907 218 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 SLC36A2Q495M3 483 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 PDSS1Q5T2R2 415 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 FAM57BQ71RH2 274 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF283Q8N7M2 679 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ZNF680Q8NEM1 530 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 GJC3Q8NFK1 279 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 FDCSPQ8NFU4 85 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 OR51D1Q8NGF3 324 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 OR1J2Q8NGS2 313 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 HAS2Q92819 552 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ADAT3Q96EY9 351 aaPredicted RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 PRRX2Q99811 253 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 DEFB127Q9H1M4 99 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 ABCG5Q9H222 651 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 CDIP1Q9H305 208 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 AUNIPQ9H7T9 357 aa8.09□□□□□ -1.11
ATG4A-202ENST00000345734 TNRC6AQ8NDV7 1962 aaKnown RBP8.09□□□□□ -1.11
ATG4A-202ENST00000345734 LINC00862A6NCI5 91 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 F5H5K5 113 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 TMEM127O75204 238 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 IGHV3-9P01782 118 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 PTHLHP12272 177 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 CDK2P24941 298 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 CFPP27918 469 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 POU3F4P49335 361 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 MMP15P51511 669 aa8.08□□□□□ -1.12
ATG4A-202ENST00000345734 ART1P52961 327 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms