RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 MAGEB3O15480 346 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SULT1B1O43704 296 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SSX4O60224 188 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 KDM4BO94953 1096 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 UBL3O95164 117 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 IL2RAP01589 272 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 APOA1P02647 267 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CSF3P09919 207 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CD37P11049 281 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PTHLHP12272 177 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RAB3AP20336 220 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 HTR2CP28335 458 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 WNT5AP41221 380 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 POU3F4P49335 361 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 GSK3AP49840 483 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 IDH3GP51553 393 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 FAM3AP98173 230 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TGFBR3Q03167 851 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PLP2Q04941 152 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PMPCAQ10713 525 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 LY6DQ14210 128 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 HLXQ14774 488 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 C2orf76Q3KRA6 126 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RNASE12Q5GAN4 147 aaKnown RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 UBE2NLQ5JXB2 153 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 GLT8D1Q68CQ7 371 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TMEM53Q6P2H8 277 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 XKRXQ6PP77 449 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CRIP3Q6Q6R5 217 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ZNF474Q6S9Z5 364 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 METAP1DQ6UB28 335 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 COLCA1Q6ZS62 124 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RFPL4BQ6ZWI9 263 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 WDR31Q8NA23 367 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SYNPRQ8TBG9 265 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RFT1Q96AA3 541 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 FAM3DQ96BQ1 224 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 WACQ9BTA9 647 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PRORYQ9H606 182 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CNTD2Q9H8S5 307 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 GPR173Q9NS66 373 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RHBDL2Q9NX52 303 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TUBD1Q9UJT1 453 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ADAM30Q9UKF2 790 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TBC1D24Q9ULP9 559 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 MRPS7Q9Y2R9 242 aaKnown RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 STARD10Q9Y365 291 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 MYO7BQ6PIF6 2116 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ARPC4-TTLL3A0A0A6YYG9 625 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 A0A0G2JNJ9 132 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TMEM272A0A1B0GTI8 110 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 hCG_38984A0A1B0GV85 526 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 LOC390937A0A1W2PQ73 354 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PRRG2O14669 202 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 LANCL1O43813 399 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CNOT4O95628 575 aaKnown RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 SERPINA5P05154 406 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CALCBP10092 127 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 COX5BP10606 129 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ZNF14P17017 642 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 BMP5P22003 454 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CFPP27918 469 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CEACAM8P31997 349 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 PTGER4P35408 488 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TIMP3P35625 211 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TALDO1P37837 337 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 OR3A4PP47883 348 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PITPNBP48739 271 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PSMD7P51665 324 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 UBE2NP61088 152 aaKnown RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 GK2Q14410 553 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 SF3B4Q15427 424 aaKnown RBP eCLIP3.58□□□□□ -1.84
MCF2-201ENST00000338585 ZNF181Q2M3W8 571 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 RGS21Q2M5E4 152 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 C1orf100Q5SVJ3 147 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SPATA46Q5T0L3 261 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ALKBH2Q6NS38 261 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 DCDC5Q6ZRR9 648 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 Q6ZSR3 168 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CENPSQ8N2Z9 138 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 Q8N402 240 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 NKAIN3Q8N8D7 197 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SLC30A7Q8NEW0 376 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 SEMA6DQ8NFY4 1073 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 OR5D18Q8NGL1 313 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 OR6M1Q8NGM8 313 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 NANOS1Q8WY41 292 aaKnown RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 PIGTQ969N2 578 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CYYR1Q96J86 154 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ZFP3Q96NJ6 502 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CCDC32Q9BV29 185 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 CHST5Q9GZS9 411 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 TP63Q9H3D4 680 aaPredicted RBP3.58□□□□□ -1.84
MCF2-201ENST00000338585 PTTG3PQ9NZH4 202 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 Q9UFV3 132 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ATPIF1Q9UII2 106 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 ZNF835Q9Y2P0 537 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 PCNX1Q96RV3 2341 aa3.58□□□□□ -1.84
MCF2-201ENST00000338585 KRTAP9-6A0A140TA67 174 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms