RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 ZNF133P52736 654 aaPredicted RBP13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 DHRS2Q13268 280 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 PLAC9Q5JTB6 97 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 C6orf15Q6UXA7 325 aaPredicted RBP13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 FOXL2NBQ6ZUU3 175 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 FBXO17Q96EF6 278 aa13.06□□□□□ -0.32
CLCNKA-201ENST00000331433 CRTAPO75718 401 aaPredicted RBP13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 FAHP16930 419 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 SRD5A2P31213 254 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 CD96P40200 585 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 CASRP41180 1078 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 LY6G6FQ5SQ64 297 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 SFRP5Q5T4F7 317 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 BEST3Q8N1M1 668 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 TMEM59Q9BXS4 323 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 PLEK2Q9NYT0 353 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 MAB21L2Q9Y586 359 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 LINC00862A6NCI5 91 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 LRRC3CA6NJW4 275 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 IGHEP01854 428 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 HLA-AP01891 365 aaKnown RBP13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 MPLP40238 635 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 RAC3P60763 192 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 ESCO2Q56NI9 601 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 ACER2Q5QJU3 275 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 RAB11FIP2Q7L804 512 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 C20orf196Q8IYI0 205 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 KCNG3Q8TAE7 436 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 SSC4DQ8WTU2 575 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 ROBO4Q8WZ75 1007 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 PRRT1Q99946 306 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 DEPPQ9NTK1 212 aa13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 ZNF230Q9UIE0 474 aaPredicted RBP13.05□□□□□ -0.32
CLCNKA-201ENST00000331433 GJE1A6NN92 205 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 M0R135 149 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 TRAPPC6AO75865 159 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 SCGNO76038 276 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 IGLV3-1P01715 115 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 PMP2P02689 132 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 SORDQ00796 357 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CHAF1BQ13112 559 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 WIPI1Q5MNZ9 446 aaPredicted RBP13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 OR2W3Q7Z3T1 314 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 C1QL2Q7Z5L3 287 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 GGNQ86UU5 652 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 STEAP2Q8NFT2 490 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 RAB3CQ96E17 227 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 ZNF799Q96GE5 643 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 P4HTMQ9NXG6 502 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 SLC2A8Q9NY64 477 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 TTC28Q96AY4 2481 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 OR2AT4A6NND4 320 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CXCL13O43927 109 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 ICAM2P13598 275 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 GSK3AP49840 483 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 ZNF84P51523 738 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 SUCLG1P53597 346 aaKnown RBP13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 TMEM50BP56557 158 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CARD18P57730 90 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 HIST1H3AP68431 136 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 KISS1Q15726 138 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 MPPED2Q15777 294 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 UBE2V2Q15819 145 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 HIST2H3PS2Q5TEC6 136 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CRIP3Q6Q6R5 217 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 HIST2H3AQ71DI3 136 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 ALKBH3Q96Q83 286 aaPredicted RBP13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CST11Q9H112 138 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CRLF2Q9HC73 371 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 FLVCR1Q9Y5Y0 555 aa13.04□□□□□ -0.32
CLCNKA-201ENST00000331433 CCDC187A0A096LP49 1063 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 PINLYPA6NC86 204 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 RAD51DO75771 328 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 DHRS3O75911 302 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 HPP00738 406 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 CHRM2P08172 466 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 HIST1H1DP16402 221 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 ZNF24P17028 368 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 P2RX3P56373 397 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 IKZF1Q13422 519 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 SNAI3Q3KNW1 292 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 C3P1Q6ZMU1 363 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 DTWD2Q8NBA8 298 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 ARHGAP5-AS1Q96IT6 56 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 NUDT16L1Q9BRJ7 211 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 MYOZ1Q9NP98 299 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 PIGLQ9Y2B2 252 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 PLEKHA6Q9Y2H5 1048 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 NOP16Q9Y3C1 178 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 A0A0U1RQV5 110 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 PPP3CBP16298 524 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 POU3F2P20265 443 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 C4BPBP20851 252 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 CD34P28906 385 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 S100A11P31949 105 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 OTX1P32242 354 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 ECH1Q13011 328 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 PPP1R1AQ13522 171 aa13.03□□□□□ -0.32
CLCNKA-201ENST00000331433 SSPNQ14714 243 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms