RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 GNPNAT1Q96EK6 184 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 MGST2Q99735 147 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ELOVL4Q9GZR5 314 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 UGGT1Q9NYU2 1555 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ADGRB3O60242 1522 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC17A2O00624 439 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 CDX4O14627 284 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SPINT1O43278 529 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 USP2O75604 605 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 EIF3GO75821 320 aaKnown RBP eCLIP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 NRASP01111 189 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 HRASP01112 189 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 KRASP01116 189 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ARG1P05089 322 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ISG15P05161 165 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 HOXB7P09629 217 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 MMP15P51511 669 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 MVDP53602 400 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 MTCP1P56278 107 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 WNT3AP56704 352 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 RAC3P60763 192 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SUMO2P61956 95 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM241Q24JQ0 296 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM182BQ5T319 152 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 AGTRAPQ6RW13 159 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 OR1F12Q8NHA8 337 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 DPH2Q9BQC3 489 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TPSD1Q9BZJ3 242 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FNDC4Q9H6D8 234 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 GRPP07492 148 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SAA1P0DJI8 122 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ACP2P11117 423 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FGF8P55075 233 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ERV3-1Q14264 604 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 TMEM201Q5SNT2 666 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 WDR25Q64LD2 544 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SUSD1Q6UWL2 747 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF683Q8IZ20 524 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 GPR26Q8NDV2 337 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM151AQ8WW52 585 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC22A12Q96S37 553 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 NPY6RQ99463 290 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 DDOQ99489 341 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 RASL11BQ9BPW5 248 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 PRTFDC1Q9NRG1 225 aa6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ARHGEF28Q8N1W1 1705 aaKnown RBP6.95□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF536O15090 1300 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ST6GAL1P15907 406 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ACRV1P26436 265 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 PRDX4Q13162 271 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SPPL3Q8TCT6 385 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SLAMF6Q96DU3 332 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 NIPSNAP1Q9BPW8 284 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 VN1R3Q9BXE9 311 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ADARB2Q9NS39 739 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 N4BP2Q86UW6 1770 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 RNASET2O00584 256 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 AQP9O43315 295 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 TRACP01848 142 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 FGF1P05230 155 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 DNAJB13P59910 316 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 EIF3IQ13347 325 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 FAM183BPQ6ZVS7 135 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 RTN4RL1Q86UN2 441 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 LRRC75AQ8NAA5 344 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ART4Q93070 314 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ZNF625Q96I27 306 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 PGLYRP3Q96LB9 341 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 GMLQ99445 158 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 HSD17B10Q99714 261 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 RTN4RQ9BZR6 473 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 HLA-GP17693 338 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 ZDHHC24Q6UX98 284 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 LBX2Q6XYB7 198 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 OR1L1Q8NH94 360 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 TRAV38-1A0A0B4J264 116 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 A0A1W2PP11 408 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 DLL1O00548 723 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 HIST1H1BP16401 226 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC19A1P41440 591 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SLC6A11P48066 632 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 TDGF1P3P51864 188 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 DLK1P80370 383 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SSBP2P81877 361 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 MIDNQ504T8 468 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 DNM1P46Q6ZS02 220 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 TMIGD2Q96BF3 282 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 PRAP1Q96NZ9 151 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 COMMD5Q9GZQ3 224 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SDR39U1Q9NRG7 319 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 RNF181Q9P0P0 153 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 GPR45Q9Y5Y3 372 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 IGHV3-64DA0A0J9YX35 117 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 JTBO76095 146 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 HAPLN1P10915 354 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 HNRNPH3P31942 346 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 DLX6P56179 175 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 RPL26P61254 145 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 TROAPQ12815 778 aa6.94□□□□□ -1.3
LIMCH1-201ENST00000313860 SCARF1Q14162 830 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms