RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 ZNF468Q5VIY5 522 aaPredicted RBP15.66■□□□□ 0.1
SYNPO-201ENST00000307662 OTPQ5XKR4 325 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 OR8B4Q96RC9 309 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 SLC35B3Q9H1N7 401 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 ADGRL4Q9HBW9 690 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 MMP24Q9Y5R2 645 aa15.66■□□□□ 0.1
SYNPO-201ENST00000307662 HMGA2P52926 109 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 SHBQ15464 509 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 OR2B11Q5JQS5 317 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 C1QTNF12Q5T7M4 302 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 MRM1Q6IN84 353 aaKnown RBP15.65■□□□□ 0.1
SYNPO-201ENST00000307662 TOMM20LQ6UXN7 152 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 SLC16A13Q7RTY0 426 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 CDC20BQ86Y33 519 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 OR52N4Q8NGI2 321 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 OTOSQ8NHW6 89 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 RDH5Q92781 318 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 WBP2Q969T9 261 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 APH1AQ96BI3 265 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 TRAPPC1Q9Y5R8 145 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 V9GYH0 126 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 SH2D1BO14796 132 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 PMP22Q01453 160 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 CT45A10P0DMU9 189 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 PPP1R1AQ13522 171 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 TMPRSS11FQ6ZWK6 438 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 BVESQ8NE79 360 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 HMGCLL1Q8TB92 370 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 FAM173AQ9BQD7 235 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 CLDN34H7C241 214 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 CXCL12P48061 93 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 RAE1P78406 368 aaKnown RBP15.65■□□□□ 0.1
SYNPO-201ENST00000307662 IGSF11Q5DX21 431 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 CISD2Q8N5K1 135 aaKnown RBP15.65■□□□□ 0.1
SYNPO-201ENST00000307662 NTNG2Q96CW9 530 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 PLAC1Q9HBJ0 212 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 WSB1Q9Y6I7 421 aa15.65■□□□□ 0.1
SYNPO-201ENST00000307662 PRSS23O95084 383 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SCAND1P57086 179 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 EXT1Q16394 746 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 PLA1AQ53H76 456 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 C9orf62Q8N4C0 152 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 OXGR1Q96P68 337 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 ZMAT5Q9UDW3 170 aaKnown RBP15.64■□□□□ 0.09
SYNPO-201ENST00000307662 DUSP13Q9UII6 198 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SIGLEC7Q9Y286 467 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 KCNE3Q9Y6H6 103 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 TMEM272A0A1B0GTI8 110 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 AQP7P3A6NL99 342 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 MPC2O95563 127 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SELEP16581 610 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 KIAA0040Q15053 153 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 ZNF77Q15935 545 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 PELI1Q96FA3 418 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 LINC00615Q96LM1 132 aaPredicted RBP15.64■□□□□ 0.09
SYNPO-201ENST00000307662 ANKUB1A6NFN9 424 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SLC31A2O15432 143 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SFT2D2O95562 160 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 FCER1GP30273 86 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 GPR12P47775 334 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 ZNF121P58317 390 aaPredicted RBP15.64■□□□□ 0.09
SYNPO-201ENST00000307662 DCAF12Q5T6F0 453 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 CD300LDQ6UXZ3 194 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 CHRDL1Q9BU40 450 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 PRO1933Q9H354 126 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 OR5V1Q9UGF6 321 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 ST3GAL6Q9Y274 331 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 C9orf170A2RU37 121 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SIRPB1O00241 398 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 CST7O76096 145 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 SELENOPP49908 381 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 OR5AS1Q8N127 324 aa15.64■□□□□ 0.09
SYNPO-201ENST00000307662 PINX1Q96BK5 328 aaKnown RBP15.64■□□□□ 0.09
SYNPO-201ENST00000307662 A0A1W2PNR3 127 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 OR7C2O60412 319 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 DEFA4P12838 97 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 CSNK1EP49674 416 aaKnown RBP15.63■□□□□ 0.09
SYNPO-201ENST00000307662 OSR2Q8N2R0 312 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 TEX101Q9BY14 249 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 LANCL2Q9NS86 450 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 LRP12Q9Y561 859 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 MYO9BQ13459 2157 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 ANKRD20A5PA0PJZ0 165 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 CLEC18AA5D8T8 446 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 MMP7P09237 267 aaPredicted RBP15.63■□□□□ 0.09
SYNPO-201ENST00000307662 BTG2P78543 158 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 RUNX2Q13950 521 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 DRAM2Q6UX65 266 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 CLEC18CQ8NCF0 446 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 OR6S1Q8NH40 331 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 YTHDF2Q9Y5A9 579 aaKnown RBP15.63■□□□□ 0.09
SYNPO-201ENST00000307662 COL16A1Q07092 1604 aaPredicted RBP15.63■□□□□ 0.09
SYNPO-201ENST00000307662 LINC00862A6NCI5 91 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 IGHV3-9P01782 118 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 B4GALNT1Q00973 533 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 OR8G1Q15617 311 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 ZNF573Q86YE8 665 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 ZC3HAV1LQ96H79 300 aaKnown RBP15.63■□□□□ 0.09
SYNPO-201ENST00000307662 EDEM2Q9BV94 578 aa15.63■□□□□ 0.09
SYNPO-201ENST00000307662 LYRM2Q9NU23 88 aaPredicted RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms