RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 OR5M8Q8NGP6 311 aa8.46□□□□□ -1.05
CUX1-201ENST00000292535 BAHD1Q8TBE0 780 aaPredicted RBP8.46□□□□□ -1.05
CUX1-201ENST00000292535 ERGIC1Q969X5 290 aa8.46□□□□□ -1.05
CUX1-201ENST00000292535 SMIM7Q9BQ49 75 aa8.46□□□□□ -1.05
CUX1-201ENST00000292535 PPT2Q9UMR5 302 aa8.46□□□□□ -1.05
CUX1-201ENST00000292535 TRGV5A0A0B4J1U4 118 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 GUSBP08236 651 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 TMEM174Q8WUU8 243 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 APOBEC3DQ96AK3 386 aaPredicted RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 C10orf90Q96M02 699 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 FOXJ3Q9UPW0 622 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 HRH3Q9Y5N1 445 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 TXNDC12O95881 172 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 SMAGPQ0VAQ4 97 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 DUSP5Q16690 384 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 SYS1Q8N2H4 156 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 EIF4E3Q8N5X7 224 aaKnown RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 TOX3O15405 576 aaPredicted RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 SIX6O95475 246 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 SBK2P0C263 348 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 EIF3IQ13347 325 aaKnown RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 KIAA0141Q14154 515 aaPredicted RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 IQCJQ1A5X6 159 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 TMEM268Q5VZI3 342 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 OR13F1Q8NGS4 319 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 MFRPQ9BY79 579 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 ZNF391Q9UJN7 358 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 DAPP1Q9UN19 280 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 SIRPB1O00241 398 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 IAPPP10997 89 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 HOXA4Q00056 320 aaPredicted RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 SLC36A1Q7Z2H8 476 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 RPEQ96AT9 228 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 Q96M85 177 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 GP2P55259 537 aaKnown RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 COL16A1Q07092 1604 aaPredicted RBP8.46□□□□□ -1.06
CUX1-201ENST00000292535 ICOSLGO75144 302 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 CPN1P15169 458 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 DEFB123Q8N688 67 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 ADIPOR1Q96A54 375 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 C2orf50Q96LR7 162 aa8.46□□□□□ -1.06
CUX1-201ENST00000292535 MMP11P24347 488 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 TMEM211Q6ICI0 200 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 CMC2Q9NRP2 79 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 SIGLEC1Q9BZZ2 1709 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 T-ENOLP0DO92 83 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 AQP6Q13520 282 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 SLC17A1Q14916 467 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 TRNP1Q6NT89 227 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 RBPMS2Q6ZRY4 209 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 LKAAEAR1Q8TD35 194 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ROBO4Q8WZ75 1007 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 OR2A25A4D2G3 310 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ALOX5APP20292 161 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 RPL12P30050 165 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 CLDN15P56746 228 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ELFN2Q5R3F8 820 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 FDX2Q6P4F2 183 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 DOLPP1Q86YN1 238 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 TTC9Q92623 222 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 RPUSD4Q96CM3 377 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 PHF7Q9BWX1 381 aaPredicted RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 GABARAPL3Q9BY60 117 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 GSX2Q9BZM3 304 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 POMT1Q9Y6A1 747 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 OR13H1Q8NG92 308 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 GATA6Q92908 595 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 APEHP13798 732 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 PPICP45877 212 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 PNLIPRP2P54317 469 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 OCEL1Q9H607 264 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ZDHHC11Q9H8X9 412 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 FBXO34Q9NWN3 711 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 MMP17Q9ULZ9 603 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 A0A096LPE4 126 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 A0A1W2PPZ6 126 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 PIGAP37287 484 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 FZD2Q14332 565 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 B3GNTL1Q67FW5 361 aaPredicted RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 SLC24A4Q8NFF2 622 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 GRAMD2BQ96HH9 432 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ZNF727A8MUV8 499 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 LRP3O75074 770 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 MDH2P40926 338 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 Q56UQ5 140 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 LYRM7Q5U5X0 104 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ST8SIA4Q92187 359 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 NTN4Q9HB63 628 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 SLC17A5Q9NRA2 495 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 MRPL22Q9NWU5 206 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 CRYBG1Q9Y4K1 1723 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 IGHV3-20A0A0C4DH32 117 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 CIDEAO60543 219 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 AQP8O94778 261 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 RBP4P02753 201 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 HTRA4P83105 476 aaPredicted RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 LSM2Q9Y333 95 aaKnown RBP8.45□□□□□ -1.06
CUX1-201ENST00000292535 NME2P1O60361 137 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 ADRB1P08588 477 aa8.45□□□□□ -1.06
CUX1-201ENST00000292535 DDOSTP39656 456 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms