RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MYO9BQ13459 2157 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 A0A0A6YYD5 115 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 C15orf38-AP3S2A0A0A6YYH1 394 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TRAV19A0A0A6YYK7 116 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IGHV6-1A0A0B4J1U7 121 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 A0A1B0GU33 70 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IZUMO1RA6ND01 250 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 GOLGA6L4A6NEF3 574 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR6C70A6NIJ9 312 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR2AG2A6NM03 316 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 LYRM9A8MSI8 78 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PHGR1C9JFL3 82 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 D6RAR5 112 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 E7EQL1 145 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PRAMEF26H0Y7S4 382 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 H0YCG3 227 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 H3BQ85 93 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SIRPB1O00241 398 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 MANBAO00462 879 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 EIF3HO15372 352 aaKnown RBP eCLIP0.05□□□□□ -2.4
VPS35-212ENST00000640313 AQP9O43315 295 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF73O43830 326 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 GMFGO60234 142 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CDC40O60508 579 aaKnown RBP eCLIP0.05□□□□□ -2.4
VPS35-212ENST00000640313 SLC16A7O60669 478 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RAD1O60671 282 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CTNSO60931 367 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 NOL3O60936 208 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 ENTPD6O75354 484 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RDH16O75452 317 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 KCNK2O95069 426 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 FARS2O95363 451 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 LCA5LO95447 670 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 FGFR1OPO95684 399 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 TRBV12-3P01733 135 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 MT-ND4P03905 459 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RPN2P04844 631 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TACSTD2P09758 323 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR5AC1P0C628 307 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 THRAP10827 490 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 MCF2P10911 925 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF708P17019 499 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 GABRG2P18507 467 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CSNK2A2P19784 350 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 MX1P20591 662 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CSRP1P21291 193 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 PRKACBP22694 351 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CXCR1P25024 350 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TEAD1P28347 426 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PBLDP30039 288 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 FOXN2P32314 431 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IFNA8P32881 189 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 COILP38432 576 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 NAA10P41227 235 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 NBL1P41271 181 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PPICP45877 212 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IFNAR2P48551 515 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ACOT2P49753 483 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RAB9AP51151 201 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ACLYP53396 1101 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 OR12D2P58182 307 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TAS2R43P59537 309 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TAS2R46P59540 309 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RAB10P61026 200 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PRB3Q04118 309 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 LIPEQ05469 1076 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF33AQ06730 810 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TGM3Q08188 693 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ECH1Q13011 328 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 SELENBP1Q13228 472 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 DHRS2Q13268 280 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 DGCR6Q14129 220 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF266Q14584 549 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TRAM2Q15035 370 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TAF7Q15545 349 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 TGFBIQ15582 683 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ZNF141Q15928 474 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 IMMTQ16891 758 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 HSDL1Q3SXM5 330 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 C6orf99Q4VX62 202 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CCDC92Q53HC0 331 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 PYDC2Q56P42 97 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PDZD11Q5EBL8 140 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 XKR7Q5GH72 579 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PPM1LQ5SGD2 360 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 LDLRAD2Q5SZI1 272 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 MRPL2Q5T653 305 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 LIN9Q5TKA1 542 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 C9orf135Q5VTT2 229 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 TMEM236Q5W0B7 351 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CENPPQ6IPU0 288 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PMF1Q6P1K2 205 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 RNASEKQ6P5S7 137 aaKnown RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 METAP1DQ6UB28 335 aaPredicted RBP0.05□□□□□ -2.4
VPS35-212ENST00000640313 TMEM107Q6UX40 140 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CLEC18BQ6UXF7 455 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 CCDC73Q6ZRK6 1079 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 PPP1R42Q7Z4L9 355 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 COMTD1Q86VU5 262 aa0.05□□□□□ -2.4
VPS35-212ENST00000640313 ERO1BQ86YB8 467 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms