RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CNTD2Q9H8S5 307 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 ZNRD1Q9P1U0 126 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 RPUSD1Q9UJJ7 312 aaKnown RBP12.36□□□□□ -0.43
SYNE2-228ENST00000639659 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 A0A1B0GVI7 797 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 C5orf63A6NC05 138 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 PTP4A3O75365 173 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 FCN3O75636 299 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 ECDO95905 644 aaPredicted RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 NPPAP01160 153 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 GABRA5P31644 462 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 RPS27P42677 84 aaKnown RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 FXYD6P3P58550 94 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 GMFBP60983 142 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 ZNF92Q03936 586 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 IKZF1Q13422 519 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 SLC36A3Q495N2 470 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 CMTM4Q8IZR5 234 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 OR6V1Q8N148 313 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 PNKDQ8N490 385 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 GCSAMQ8N6F7 178 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 OR56B2PQ8NGI1 322 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 OR4K13Q8NH42 304 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 OR52J3Q8NH60 311 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 H1FXQ92522 213 aaKnown RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 RCN3Q96D15 328 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 SIKE1Q9BRV8 207 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 TOR3AQ9H497 397 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 KRCC1Q9NPI7 259 aaPredicted RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 CMTM6Q9NX76 183 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 ADA2Q9NZK5 511 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 SIGLEC9Q9Y336 463 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 FAM32AQ9Y421 112 aaKnown RBP12.35□□□□□ -0.43
SYNE2-228ENST00000639659 KPTNQ9Y664 436 aa12.35□□□□□ -0.43
SYNE2-228ENST00000639659 GMDSO60547 372 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 SLC2A1P11166 492 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 NCK1P16333 377 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 NOS3P29474 1203 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 TGFBR2P37173 567 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 LIPEQ05469 1076 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 RFX4Q33E94 735 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 GLYATL3Q5SZD4 288 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 SLC35E4Q6ICL7 350 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 SMARCD3Q6STE5 483 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 Q6ZPA2 131 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 C1orf122Q6ZSJ8 110 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 CBLL1Q75N03 491 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 TSEN54Q7Z6J9 526 aaKnown RBP12.34□□□□□ -0.43
SYNE2-228ENST00000639659 FAM216BQ8N7L0 139 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 SDR9C7Q8NEX9 313 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 OR8S1Q8NH09 359 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 MRAPQ8TCY5 172 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 LRRC29Q8WV35 223 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 SPTSSAQ969W0 71 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 FOXJ3Q9UPW0 622 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 ENPP4Q9Y6X5 453 aa12.34□□□□□ -0.43
SYNE2-228ENST00000639659 TRBV4-1A0A0J9YWV2 114 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 MEIOCA2RUB1 952 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 BHLHE40O14503 412 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 NPFFO15130 113 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 DIRAS1O95057 198 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 TXNDC12O95881 172 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 HIST1H1CP16403 213 aaKnown RBP12.33□□□□□ -0.44
SYNE2-228ENST00000639659 ZNF823P16415 610 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 ANOS1P23352 680 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 OMPP47874 163 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 GUCA2AQ02747 115 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 HERPUD1Q15011 391 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 LY6EQ16553 131 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 PCK2Q16822 640 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 MICBQ29980 383 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 KRTAP27-1Q3LI81 207 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 WDR38Q5JTN6 314 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 LYG1Q8N1E2 194 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 MAP6Q96JE9 813 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 COPS4Q9BT78 406 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 IFT27Q9BW83 186 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 ANKRD19PQ9H560 264 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 PNRC2Q9NPJ4 139 aaKnown RBP12.33□□□□□ -0.44
SYNE2-228ENST00000639659 C14orf119Q9NWQ9 140 aa12.33□□□□□ -0.44
SYNE2-228ENST00000639659 RNASEK-C17orf49H0YIS7 233 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 TBX1O43435 398 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 NDUFB3O43676 98 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 TSPAN9O75954 239 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 SLC6A6P31641 620 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 PYCR1P32322 319 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 PRKXP51817 358 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 MZT1Q08AG7 82 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 SEC23BQ15437 767 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 TAF13Q15543 124 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 GALNT4Q8N4A0 578 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 PLPP7Q8NBV4 271 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 ITPKCQ96DU7 683 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 SEH1LQ96EE3 360 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 OR52D1Q9H346 318 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 SAR1AQ9NR31 198 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 MRPL15Q9P015 296 aaKnown RBP12.32□□□□□ -0.44
SYNE2-228ENST00000639659 CYB5R1Q9UHQ9 305 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 CAPN7Q9Y6W3 813 aa12.32□□□□□ -0.44
SYNE2-228ENST00000639659 V9GYQ6 96 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms