RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RPRD1BQ9NQG5 326 aaKnown RBP15.99■□□□□ 0.15
CLN3-262ENST00000637699 CYB5R1Q9UHQ9 305 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 AP3M1Q9Y2T2 418 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 FAM32AQ9Y421 112 aaKnown RBP15.99■□□□□ 0.15
CLN3-262ENST00000637699 TRBV4-1A0A0J9YWV2 114 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 ZNF816-ZNF321PA0A0X1KG74 233 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 hCG_1807616A0A1W2PRN6 198 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 GGT3PA6NGU5 568 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 M0R135 149 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 ECDO95905 644 aaPredicted RBP15.98■□□□□ 0.15
CLN3-262ENST00000637699 SLC7A2P52569 658 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 PRB3Q04118 309 aaPredicted RBP15.98■□□□□ 0.15
CLN3-262ENST00000637699 CDONQ4KMG0 1287 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 LNX2Q8N448 690 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 GCSAMQ8N6F7 178 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 OR4K13Q8NH42 304 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 ZNF799Q96GE5 643 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 HOPXQ9BPY8 73 aaPredicted RBP15.98■□□□□ 0.15
CLN3-262ENST00000637699 NSRP1Q9H0G5 558 aaKnown RBP15.98■□□□□ 0.15
CLN3-262ENST00000637699 FN3KQ9H479 309 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 ONECUT1Q9UBC0 465 aa15.98■□□□□ 0.15
CLN3-262ENST00000637699 RPUSD1Q9UJJ7 312 aaKnown RBP15.98■□□□□ 0.15
CLN3-262ENST00000637699 C5orf63A6NC05 138 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 BTBD17A6NE02 478 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 CSF1P09603 554 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 NCK1P16333 377 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 HIST1H1CP16403 213 aaKnown RBP15.97■□□□□ 0.15
CLN3-262ENST00000637699 ANOS1P23352 680 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 GYS2P54840 703 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 EGR3Q06889 387 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 RFX4Q33E94 735 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 FBLN7Q53RD9 439 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 OR52J3Q8NH60 311 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 SPTSSAQ969W0 71 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 FAM162AQ96A26 154 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 MAP6Q96JE9 813 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 FAM107BQ9H098 131 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 KRCC1Q9NPI7 259 aaPredicted RBP15.97■□□□□ 0.15
CLN3-262ENST00000637699 NDUFAF4Q9P032 175 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 DNAJB11Q9UBS4 358 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 KPTNQ9Y664 436 aa15.97■□□□□ 0.15
CLN3-262ENST00000637699 A0A1B0GVI7 797 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 DIRAS1O95057 198 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 FBP1P09467 338 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 GSK3BP49841 420 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 NUDT2P50583 147 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 ELF3P78545 371 aaPredicted RBP15.96■□□□□ 0.15
CLN3-262ENST00000637699 GLYATL3Q5SZD4 288 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 HIST2H2BDQ6DRA6 164 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 HACD2Q6Y1H2 254 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 ZBTB46Q86UZ6 589 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 FANK1Q8TC84 345 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 CCL13Q99616 98 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 MRPL22Q9NWU5 206 aaKnown RBP15.96■□□□□ 0.15
CLN3-262ENST00000637699 ADA2Q9NZK5 511 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 MRPL15Q9P015 296 aaKnown RBP15.96■□□□□ 0.15
CLN3-262ENST00000637699 VPREB3Q9UKI3 123 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 ZNF281Q9Y2X9 895 aa15.96■□□□□ 0.15
CLN3-262ENST00000637699 CAB39Q9Y376 341 aaPredicted RBP15.96■□□□□ 0.15
CLN3-262ENST00000637699 A0A1B0GW55 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 A0A1W2PRD5 423 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 A0A1W2PRF3 423 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 A0A1W2PRM7 423 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 OR6C68A6NDL8 312 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 G3V4G9 280 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 SNX3O60493 162 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 TSPAN9O75954 239 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 LHBP01229 141 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L2P0CJ85 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L3P0CJ86 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L4P0CJ87 422 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L5P0CJ88 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L6P0CJ89 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L7P0CJ90 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 RHCEP18577 417 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 SLC6A6P31641 620 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 RPS27P42677 84 aaKnown RBP15.95■□□□□ 0.14
CLN3-262ENST00000637699 C11orf91Q3C1V1 193 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 TEX36Q5VZQ5 186 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4L9Q6RFH8 374 aaPredicted RBP15.95■□□□□ 0.14
CLN3-262ENST00000637699 SPERTQ8NA61 448 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 SDR9C7Q8NEX9 313 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 IFT27Q9BW83 186 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 OR52D1Q9H346 318 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 SIRT7Q9NRC8 400 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 ZNRD1Q9P1U0 126 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 KAAG1Q9UBP8 84 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 DUX4Q9UBX2 424 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 N6AMT1Q9Y5N5 214 aa15.95■□□□□ 0.14
CLN3-262ENST00000637699 TET2Q6N021 2002 aaPredicted RBP15.94■□□□□ 0.14
CLN3-262ENST00000637699 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.94■□□□□ 0.14
CLN3-262ENST00000637699 BHLHE40O14503 412 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 ARPC3O15145 178 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 PRB2P02812 416 aaPredicted RBP15.94■□□□□ 0.14
CLN3-262ENST00000637699 ZNF823P16415 610 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 NOS3P29474 1203 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 TGFBR2P37173 567 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 DLX1P56177 255 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 BEAN1Q3B7T3 259 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 OR56B2PQ8NGI1 322 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms