RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RHOXF1Q8NHV9 184 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 ITLN1Q8WWA0 313 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 SPTSSAQ969W0 71 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 RAB39BQ96DA2 213 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 OR2V2Q96R30 315 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 APOL4Q9BPW4 351 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 NPTNQ9Y639 398 aa16.24■□□□□ 0.19
CLN3-260ENST00000637578 TRAV20A0A0B4J274 112 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 H0YAE9 185 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 M0R135 149 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 ENTPD6O75354 484 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 IGHV2-70P01814 119 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 LCATP04180 440 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 MRPL3P09001 348 aaKnown RBP16.23■□□□□ 0.19
CLN3-260ENST00000637578 GNAO1P09471 354 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 SELEP16581 610 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 IZUMO2Q6UXV1 221 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 PEG10Q86TG7 708 aaKnown RBP16.23■□□□□ 0.19
CLN3-260ENST00000637578 ST7LQ8TDW4 575 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 TFAP2CQ92754 450 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 ZNF799Q96GE5 643 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 SIGLEC11Q96RL6 698 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 GCM1Q9NP62 436 aa16.23■□□□□ 0.19
CLN3-260ENST00000637578 MLNRO43193 412 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 MPZL2O60487 215 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 HTR1FP30939 366 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 IL5RAQ01344 420 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 HNRNPA0Q13151 305 aaKnown RBP16.22■□□□□ 0.19
CLN3-260ENST00000637578 OCLNQ16625 522 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 DRAM2Q6UX65 266 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 LPAR2Q9HBW0 351 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 G6PC2Q9NQR9 355 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 WARS2Q9UGM6 360 aaKnown RBP16.22■□□□□ 0.19
CLN3-260ENST00000637578 PPP1R3CQ9UQK1 317 aa16.22■□□□□ 0.19
CLN3-260ENST00000637578 H0YL77 283 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 PLPP2O43688 288 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 ANOS1P23352 680 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 MALLQ13021 153 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 MEDAGQ5VYS4 303 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 SHFQ7M4L6 423 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 SPATA3Q8NHX4 192 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 APH1BQ8WW43 257 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 RFKQ969G6 155 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 SLAMF6Q96DU3 332 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 MEGF10Q96KG7 1140 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 CNN2Q99439 309 aaKnown RBP16.21■□□□□ 0.19
CLN3-260ENST00000637578 GAL3ST1Q99999 423 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 HAO2Q9NYQ3 351 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 DYSFO75923 2080 aa16.21■□□□□ 0.19
CLN3-260ENST00000637578 IFNL4K9M1U5 179 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 PHF1O43189 567 aaPredicted RBP16.21■□□□□ 0.18
CLN3-260ENST00000637578 RBMXP38159 391 aaKnown RBP16.21■□□□□ 0.18
CLN3-260ENST00000637578 VHLP40337 213 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 IL18R1Q13478 541 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 EIF2B1Q14232 305 aaKnown RBP16.21■□□□□ 0.18
CLN3-260ENST00000637578 SNAI3Q3KNW1 292 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 TMEM155Q4W5P6 130 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 SLC16A9Q7RTY1 509 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 LRRC28Q86X40 367 aaPredicted RBP16.21■□□□□ 0.18
CLN3-260ENST00000637578 SETD9Q8NE22 299 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 OR10AD1Q8NGE0 317 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 OR51G2Q8NGK0 314 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 KCNJ15Q99712 375 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 REPIN1Q9BWE0 567 aaKnown RBP16.21■□□□□ 0.18
CLN3-260ENST00000637578 ADGRL4Q9HBW9 690 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 TMEM100Q9NV29 134 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 CLN6Q9NWW5 311 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 KLHDC2Q9Y2U9 406 aa16.21■□□□□ 0.18
CLN3-260ENST00000637578 C5orf63A6NC05 138 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 TMEM178BH3BS89 294 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 APOL3O95236 402 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 SRP9P49458 86 aaKnown RBP16.2■□□□□ 0.18
CLN3-260ENST00000637578 MMP16P51512 607 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 HCCSP53701 268 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 ISL1P61371 349 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 PGAP1Q75T13 922 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 RHOUQ7L0Q8 258 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 BHLHE23Q8NDY6 225 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 OTOSQ8NHW6 89 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 CNIH3Q8TBE1 160 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 AMELYQ99218 206 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 COPS4Q9BT78 406 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 ABHD6Q9BV23 337 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 YIPF3Q9GZM5 350 aa16.2■□□□□ 0.18
CLN3-260ENST00000637578 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLN3-260ENST00000637578 ZNF878C9JN71 531 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 WBP4O75554 376 aaKnown RBP16.19■□□□□ 0.18
CLN3-260ENST00000637578 SBK2P0C263 348 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 GATA4P43694 442 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 ZNF92Q03936 586 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 TMED1Q13445 227 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 ZMYND11Q15326 602 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 ZNF181Q2M3W8 571 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 SPATC1Q76KD6 591 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 C8orf59Q8N0T1 100 aaPredicted RBP16.19■□□□□ 0.18
CLN3-260ENST00000637578 CELF2-AS1Q8N7Q2 184 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 ZNF454Q8N9F8 522 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 RNF133Q8WVZ7 376 aa16.19■□□□□ 0.18
CLN3-260ENST00000637578 ISPDA4D126 451 aa16.18■□□□□ 0.18
CLN3-260ENST00000637578 F5H5P2 479 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms