RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TUBD1Q9UJT1 453 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 PROCRQ9UNN8 238 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 ETV7Q9Y603 341 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 SVILO95425 2214 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 RTTNQ86VV8 2226 aa14.66□□□□□ -0.06
CLN3-252ENST00000636907 A0A0G2JMP0 313 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 A0A0X1KG70 313 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 LOC390937A0A1W2PQ73 354 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 ISPDA4D126 451 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 MTRF1O75570 445 aaKnown RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 CGAP01215 116 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CSF3P09919 207 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 TMIGD3P0DMS9 266 aaPredicted RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 IL7P13232 177 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 STOMP27105 288 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 TGFBR3Q03167 851 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 GSG1Q2KHT4 349 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 PRR30Q53SZ7 412 aaPredicted RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 C3P1Q6ZMU1 363 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 PGAP1Q75T13 922 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 JAGN1Q8N5M9 183 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 NAXEQ8NCW5 288 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CCDC54Q8NEL0 328 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 OR4M2Q8NGB6 313 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 OR52N4Q8NGI2 321 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CHPT1Q8WUD6 406 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 SNRNP40Q96DI7 357 aaKnown RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 SLX1AQ9BQ83 275 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 C1QTNF5Q9BXJ0 243 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 TMEM138Q9NPI0 162 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 RHBDD3Q9Y3P4 386 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 C5orf49A4QMS7 147 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 SULT1B1O43704 296 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 EDN3P14138 238 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 FAHP16930 419 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 COX5AP20674 150 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CCNOP22674 350 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 HTR2CP28335 458 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 THBS4P35443 961 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 SCAND1P57086 179 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 PLP2Q04941 152 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 PLA2G7Q13093 441 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 TSC22D1Q15714 1073 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 GABRA6Q16445 453 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 C1orf100Q5SVJ3 147 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 COLCA1Q6ZS62 124 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 MDP1Q86V88 176 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 OR5AS1Q8N127 324 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CENPSQ8N2Z9 138 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 OR6M1Q8NGM8 313 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 SYNPRQ8TBG9 265 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 ZCCHC14Q8WYQ9 949 aaKnown RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 FAM3DQ96BQ1 224 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 POM121L2Q96KW2 1035 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 OPN3Q9H1Y3 402 aaPredicted RBP14.65□□□□□ -0.06
CLN3-252ENST00000636907 KCNK15Q9H427 330 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 PIGLQ9Y2B2 252 aa14.65□□□□□ -0.06
CLN3-252ENST00000636907 CIB4A0PJX0 185 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 CRHP06850 196 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 PITPNBP48739 271 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 POU3F4P49335 361 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 C2orf76Q3KRA6 126 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 GABRG1Q8N1C3 465 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 Q8N402 240 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 ZNF610Q8N9Z0 462 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 FOXRED1Q96CU9 486 aaPredicted RBP14.64□□□□□ -0.07
CLN3-252ENST00000636907 MS4A3Q96HJ5 214 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 ZNF75AQ96N20 296 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 ABCG5Q9H222 651 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 ASF1BQ9NVP2 202 aa14.64□□□□□ -0.07
CLN3-252ENST00000636907 PIEZO2Q9H5I5 2752 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 IGKV1-9A0A0C4DH69 117 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 A0A1W2PQ09 198 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 A0A1W2PR80 420 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 IL2RAP01589 272 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 HOXD4P09016 255 aaPredicted RBP14.63□□□□□ -0.07
CLN3-252ENST00000636907 ACKR3P25106 362 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 TIMP3P35625 211 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 ART1P52961 327 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 PRSS12P56730 875 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 ZNF92Q03936 586 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 PYHIN1Q6K0P9 492 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 GFRALQ6UXV0 394 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 DCDC5Q6ZRR9 648 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 SEMA6DQ8NFY4 1073 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 OR4D6Q8NGJ1 314 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 ABHD1Q96SE0 405 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 RGCCQ9H4X1 137 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 METTL17Q9H7H0 456 aaPredicted RBP14.63□□□□□ -0.07
CLN3-252ENST00000636907 CNTD2Q9H8S5 307 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 RHBDL2Q9NX52 303 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 ZNF391Q9UJN7 358 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 NCOR2Q9Y618 2525 aa14.63□□□□□ -0.07
CLN3-252ENST00000636907 LOC100289279A0A1B0GTE1 492 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 TMEM272A0A1B0GTI8 110 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 XRCC2O43543 280 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 ERCC1P07992 297 aaPredicted RBP14.62□□□□□ -0.07
CLN3-252ENST00000636907 APLNRP35414 380 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 EFNB2P52799 333 aa14.62□□□□□ -0.07
CLN3-252ENST00000636907 UBE2NP61088 152 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms