RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 B3GNT4Q9C0J1 378 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 PLEK2Q9NYT0 353 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 PRELID1Q9Y255 219 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 CTSSP25774 331 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 STOMP27105 288 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 HIST1H3AP68431 136 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 TAGLNQ01995 201 aaKnown RBP13.75□□□□□ -0.21
CLN3-251ENST00000636853 PMPCAQ10713 525 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 TOR2AQ5JU69 321 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 HIST2H3PS2Q5TEC6 136 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 HIST2H3AQ71DI3 136 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 SLC22A24Q8N4F4 322 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ACBD4Q8NC06 268 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 OR4D10Q8NGI6 311 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 FAM46BQ96A09 425 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 LYZL4Q96KX0 146 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ACTR6Q9GZN1 396 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 RANBP3Q9H6Z4 567 aaPredicted RBP13.75□□□□□ -0.21
CLN3-251ENST00000636853 METTL17Q9H7H0 456 aaPredicted RBP13.75□□□□□ -0.21
CLN3-251ENST00000636853 ING4Q9UNL4 249 aa13.75□□□□□ -0.21
CLN3-251ENST00000636853 ARPC1BO15143 372 aaKnown RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 PEX14O75381 377 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 MAGEA5P43359 124 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 RAG2P55895 527 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 PER3P56645 1201 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 MRPS34P82930 218 aaKnown RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 FAM27BQ5VT28 67 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 PIP4P1Q86T03 277 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 DTX1Q86Y01 620 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 PAQR4Q8N4S7 273 aaPredicted RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 CLEC1AQ8NC01 280 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 TTTY12Q9BZ98 90 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 SLC23A1Q9UHI7 598 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 BET1O15155 118 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 HPXP02790 462 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 GTF2F2P13984 249 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 CXCL3P19876 107 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 CCL1P22362 96 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 ZNF93P35789 620 aaPredicted RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 UNC119Q13432 240 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 DOK3Q7L591 496 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 OR5AS1Q8N127 324 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 GPR137CQ8N3F9 429 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 OR4C16Q8NGL9 310 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 OR14K1Q8NGZ2 314 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 OR8S1Q8NH09 359 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 DVL3Q92997 716 aaPredicted RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 CPNE4Q96A23 557 aaPredicted RBP13.74□□□□□ -0.21
CLN3-251ENST00000636853 SLC6A15Q9H2J7 730 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 NOX3Q9HBY0 568 aa13.74□□□□□ -0.21
CLN3-251ENST00000636853 OTOGLQ3ZCN5 2332 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 SPAARA0A1B0GVQ0 90 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 CYTIPO60759 359 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 PDGFAP04085 211 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 PATE4P0C8F1 98 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 B4GALT1P15291 398 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 GLRX5Q86SX6 157 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 ANGPTL5Q86XS5 388 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 GPX8Q8TED1 209 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 SEH1LQ96EE3 360 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 FER1L6-AS2Q96M78 137 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 UQCC2Q9BRT2 126 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 B4GALT7Q9UBV7 327 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 ZNF222Q9UK12 451 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 M0R135 149 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 HPNP05981 417 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 TPOP07202 933 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 CSF1P09603 554 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 VSIG8P0DPA2 414 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 LHX2P50458 406 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 QRFPP83859 136 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 CSRP2Q16527 193 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 AWAT2Q6E213 333 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 TEX261Q6UWH6 196 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 GALNTL5Q7Z4T8 443 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 CMBLQ96DG6 245 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 ZNF799Q96GE5 643 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 NARFLQ9H6Q4 476 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 TMEM38BQ9NVV0 291 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 TAS2R8Q9NYW2 309 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 RAB22AQ9UL26 194 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 U3KQ87 197 aa13.73□□□□□ -0.21
CLN3-251ENST00000636853 EP300Q09472 2414 aaPredicted RBP13.72□□□□□ -0.21
CLN3-251ENST00000636853 WIPF3A6NGB9 483 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 IGHV3-9P01782 118 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 CD3DP04234 171 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 ERCC1P07992 297 aaPredicted RBP13.72□□□□□ -0.21
CLN3-251ENST00000636853 RAB6AP20340 208 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 RAD52P43351 418 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 SNRPD2P62316 118 aaKnown RBP13.72□□□□□ -0.21
CLN3-251ENST00000636853 PLGLB1Q02325 96 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 ZNF318Q5VUA4 2279 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 CD276Q5ZPR3 534 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 SLC25A25Q6KCM7 469 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 PGAP1Q75T13 922 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 TMEM251Q8N6I4 163 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 PTX4Q96A99 478 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 IP6K3Q96PC2 410 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 ZNF407Q9C0G0 2248 aa13.72□□□□□ -0.21
CLN3-251ENST00000636853 TMEM235A6NFC5 223 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms