RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 MICBQ29980 383 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 PLA1AQ53H76 456 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 PGAP1Q75T13 922 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 Q8NFD4 153 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 TFAP2CQ92754 450 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 COQ7Q99807 217 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 TMBIM4Q9HC24 238 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 ADA2Q9NZK5 511 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 LGALS13Q9UHV8 139 aa11.71□□□□□ -0.53
CLN3-249ENST00000636685 NOP16Q9Y3C1 178 aaKnown RBP11.71□□□□□ -0.53
CLN3-249ENST00000636685 TSSC4Q9Y5U2 329 aaPredicted RBP11.71□□□□□ -0.53
CLN3-249ENST00000636685 A0A1W2PQ09 198 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 H0YHG0 523 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 BIRC5O15392 142 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 GMDSO60547 372 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 CLIC3O95833 236 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 IGF2P01344 180 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 PPIBP23284 216 aaKnown RBP11.7□□□□□ -0.54
CLN3-249ENST00000636685 TGM4P49221 684 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 LSM6P62312 80 aaKnown RBP11.7□□□□□ -0.54
CLN3-249ENST00000636685 DGCR2P98153 550 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 STX3Q13277 289 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 LRRC10Q5BKY1 277 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 ZFAND6Q6FIF0 208 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 NAA40Q86UY6 237 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 MRPL41Q8IXM3 137 aaKnown RBP11.7□□□□□ -0.54
CLN3-249ENST00000636685 MICU2Q8IYU8 434 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 LRRC29Q8WV35 223 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 MYDGFQ969H8 173 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 DUS3LQ96G46 650 aaKnown RBP11.7□□□□□ -0.54
CLN3-249ENST00000636685 ATP6V1G3Q96LB4 118 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 SLC22A4Q9H015 551 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 RERGLQ9H628 205 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 NKX1-2Q9UD57 310 aaPredicted RBP11.7□□□□□ -0.54
CLN3-249ENST00000636685 TCF19Q9Y242 345 aa11.7□□□□□ -0.54
CLN3-249ENST00000636685 TRAV27A0A087WT01 109 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 TEX13CA0A0J9YWL9 993 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 A6NDX4 124 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 CD300LBA8K4G0 201 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 TFF1P04155 84 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 IFNW1P05000 195 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 VIMP08670 466 aaKnown RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 ACSM4P0C7M7 580 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 KITP10721 976 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 MUC1P15941 1255 aaPredicted RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 GPX2P18283 190 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 GSK3BP49841 420 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 BLMHQ13867 455 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 RABL3Q5HYI8 236 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 PAGE3Q5JUK9 113 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 CORO6Q6QEF8 472 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 MRPL21Q7Z2W9 205 aaKnown RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 C11orf53Q8IXP5 236 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 OR5T2Q8NGG2 359 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 OR51A7Q8NH64 312 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 HDHD2Q9H0R4 259 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 RPS6KA6Q9UK32 745 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 COA3Q9Y2R0 106 aaPredicted RBP11.69□□□□□ -0.54
CLN3-249ENST00000636685 POLR1DQ9Y2S0 133 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 MED31Q9Y3C7 131 aa11.69□□□□□ -0.54
CLN3-249ENST00000636685 TRBV5-3A0A0A0MS03 114 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 TRPC5OSA6NMA1 111 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 F5H5K5 113 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 H0YAE9 185 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 IMPA2O14732 288 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 UBDO15205 165 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 LCATP04180 440 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 TAS2R41P59536 307 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 HIST1H3AP68431 136 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 IFFO1Q0D2I5 559 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 MALLQ13021 153 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 KRTAP27-1Q3LI81 207 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 MESTQ5EB52 335 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 KHDC1LQ5JSQ8 128 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 HIST2H3PS2Q5TEC6 136 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 UNQ9370/PRO34162Q6UXP9 181 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 ADAMTSL5Q6ZMM2 481 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 ETV3LQ6ZN32 361 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 HIST2H3AQ71DI3 136 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 GLB1L2Q8IW92 636 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 DYNAPQ8N1N2 210 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 C11orf65Q8NCR3 313 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 OR9Q1Q8NGQ5 310 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 TAMM41Q96BW9 452 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 Q96M85 177 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 PRR25Q96S07 402 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 TMEM109Q9BVC6 243 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 RIMS3Q9UJD0 308 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 ADAM18Q9Y3Q7 739 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 GMEB1Q9Y692 573 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 LHFPL6Q9Y693 200 aa11.68□□□□□ -0.54
CLN3-249ENST00000636685 PRSS37A4D1T9 235 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 NKX6-3A6NJ46 265 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 EVPLLA8MZ36 301 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 SLC16A7O60669 478 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 IFI30P13284 250 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 TNFRSF1BP20333 461 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 PAICSP22234 425 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms