RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SP140LQ9H930 580 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 V9GY05 133 aa12.36□□□□□ -0.43
USP39-220ENST00000613444 TRGV8A0A0C4DH27 118 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 OR5H1A6NKK0 313 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 IFITM5A6NNB3 132 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 CBR1P16152 277 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 CFPP27918 469 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 WNT5AP41221 380 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ZNF92Q03936 586 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 SERPINA12Q8IW75 414 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 LAX1Q8IWV1 398 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 SLC30A7Q8NEW0 376 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 KCTD12Q96CX2 325 aaKnown RBP12.35□□□□□ -0.43
USP39-220ENST00000613444 REEP6Q96HR9 211 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 OBP2BQ9NPH6 170 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 AIPO00170 330 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ZNF12P17014 697 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 CCNOP22674 350 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ACKR3P25106 362 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 APLNRP35414 380 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 CCDC190Q86UF4 302 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ZNF101Q8IZC7 436 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 WDFY2Q96P53 400 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 RGCCQ9H4X1 137 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ABCB9Q9NP78 766 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ZNF391Q9UJN7 358 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 SLC25A15Q9Y619 301 aa12.35□□□□□ -0.43
USP39-220ENST00000613444 ADGRG4Q8IZF6 3080 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 CFAP46Q8IYW2 2715 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 A0A0B4J203 849 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 hCG_38984A0A1B0GV85 526 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 ICMTO60725 284 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 AGFG2O95081 481 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 PAHP00439 452 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 NGFP01138 241 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 IGLV1-44P01699 117 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 TNFSF8P32971 234 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 ETV6P41212 452 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 IDH3GP51553 393 aaPredicted RBP12.34□□□□□ -0.43
USP39-220ENST00000613444 CCDC54Q8NEL0 328 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 ZFAND2BQ8WV99 257 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 ACOT12Q8WYK0 555 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 RND1Q92730 232 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 COMMD3Q9UBI1 195 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 CKLFQ9UBR5 152 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 RHBDD3Q9Y3P4 386 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 CMAHPQ9Y471 501 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 ESPL1Q14674 2120 aa12.34□□□□□ -0.43
USP39-220ENST00000613444 DHRS7CA6NNS2 312 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 EEF1E1-BLOC1S5C9J1V9 151 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 EEF1E1O43324 174 aaKnown RBP12.33□□□□□ -0.44
USP39-220ENST00000613444 FAM3AP98173 230 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 FAM27E3Q08E93 113 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 DYNC1I2Q13409 638 aaKnown RBP12.33□□□□□ -0.44
USP39-220ENST00000613444 TMEM211Q6ICI0 200 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 FAM166AQ6J272 317 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 APOBEC3DQ96AK3 386 aaPredicted RBP12.33□□□□□ -0.44
USP39-220ENST00000613444 S100PBPQ96BU1 408 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 CNTNAP3BQ96NU0 1288 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 CNTNAP3Q9BZ76 1288 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 OSGIN2Q9Y236 505 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 STARD10Q9Y365 291 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 HIVEP3Q5T1R4 2406 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 ANXA2P2A6NMY6 339 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 CLDN25C9JDP6 229 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 RGS5O15539 181 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 XRCC2O43543 280 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 MTRF1O75570 445 aaKnown RBP12.33□□□□□ -0.44
USP39-220ENST00000613444 FAHP16930 419 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 IL32P24001 234 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 HOXC12P31275 282 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 CCKARP32238 428 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 S100A5P33763 92 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 GNALP38405 381 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 PRSS12P56730 875 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 SPOCK1Q08629 439 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 OR8B8Q15620 311 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 TIMM23BQ5SRD1 257 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 HES5Q5TA89 166 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 DDI2Q5TDH0 399 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 OR5AS1Q8N127 324 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 FAM169BQ8N8A8 192 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 OR1M1Q8NGA1 313 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 OR5D14Q8NGL3 314 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 C10orf35Q96D05 121 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 REPIN1Q9BWE0 567 aaKnown RBP12.33□□□□□ -0.44
USP39-220ENST00000613444 C1QTNF6Q9BXI9 259 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 POFUT1Q9H488 388 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 TBCCD1Q9NVR7 557 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 AMDHD2Q9Y303 409 aa12.33□□□□□ -0.44
USP39-220ENST00000613444 CADP27708 2225 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 IGKV1-9A0A0C4DH69 117 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 HPGDSO60760 199 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 SNRPBP14678 240 aaKnown RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 ZNF20P17024 532 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 PSMD7P51665 324 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 CASP6P55212 293 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 MRPL49Q13405 166 aaKnown RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 TBC1D28Q2M2D7 210 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 C22orf34Q6ZV56 151 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms