RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 F8P00451 2351 aa14.07□□□□□ -0.16
CCDC28A-202ENST00000611852 DAPL1A0PJW8 107 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 METTL15A6NJ78 407 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 SULT1C4O75897 302 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 FADS2O95864 444 aaKnown RBP14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 CD55P08174 381 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 CSF3P09919 207 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 FAM3AP98173 230 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 MFGE8Q08431 387 aaPredicted RBP14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 GFOD2Q3B7J2 385 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF786Q8N393 782 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 YIPF7Q8N8F6 280 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 OR2Z1Q8NG97 314 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 OR13G1Q8NGZ3 307 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 C10orf105Q8TEF2 133 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 FBLIM1Q8WUP2 373 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 SPRYD4Q8WW59 207 aaPredicted RBP14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 SLC30A2Q9BRI3 323 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 RHNO1Q9BSD3 238 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 DECR2Q9NUI1 292 aa14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF469Q96JG9 3925 aaPredicted RBP14.06□□□□□ -0.16
CCDC28A-202ENST00000611852 IGHV4-30-2A0A087WSY4 118 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 hCG_38984A0A1B0GV85 526 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 A0A1B0GWJ7 208 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LOC390937A0A1W2PQ73 354 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 GGT3PA6NGU5 568 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LYNX1G3V0Z9 82 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 IGHA1P01876 353 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LYNX1P0DP58 116 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 CFL1P23528 166 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 PDLIM4P50479 330 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 KLHL22Q53GT1 634 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LIPNQ5VXI9 398 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 OR56B2PQ8NGI1 322 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 OR52I1Q8NGK6 324 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 RDH5Q92781 318 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 ELMOD3Q96FG2 381 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LYZL4Q96KX0 146 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 SIGLEC11Q96RL6 698 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 TMUB1Q9BVT8 246 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 PBOV1Q9GZY1 135 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 SAP30LQ9HAJ7 183 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 G6PC2Q9NQR9 355 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 NUFIP1Q9UHK0 495 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 R4GMQ9 66 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 ACANP16112 2415 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 A0A0U1RQV5 110 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LOC110117498-PIK3R3F6TDL0 507 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 MLNRO43193 412 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 TPD52L2O43399 206 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 RPP14O95059 124 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 COL8A2P25067 703 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 MRPS11P82912 194 aaKnown RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 TNFAIP6P98066 277 aaPredicted RBP14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 CARTPTQ16568 116 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 CDONQ4KMG0 1287 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 TP53I3Q53FA7 332 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 SPRNQ5BIV9 151 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 LAIR2Q6ISS4 152 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 THAP5Q7Z6K1 395 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 OR10AD1Q8NGE0 317 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 PPP1R14AQ96A00 147 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 MOB1AQ9H8S9 216 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 TMEM100Q9NV29 134 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF391Q9UJN7 358 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 GNG8Q9UK08 70 aa14.05□□□□□ -0.16
CCDC28A-202ENST00000611852 H0YL77 283 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 NDUFS8O00217 210 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 FAM20BO75063 409 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 TTRP02766 147 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 HLA-DPB1P04440 258 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 TNFSF4P23510 183 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 DDOSTP39656 456 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 CRYBB2P43320 205 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 GSK3AP49840 483 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 MED21Q13503 144 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 OR8B8Q15620 311 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 FAM220AQ7Z4H9 259 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 KCTD20Q7Z5Y7 419 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 LHFPL3Q86UP9 236 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 CIARTQ8N365 385 aaPredicted RBP14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 RORBQ92753 470 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 YIPF5Q969M3 257 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 ZNF649Q9BS31 505 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 SOX7Q9BT81 388 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 EGLN1Q9GZT9 426 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 FGF20Q9NP95 211 aaPredicted RBP14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 DLL4Q9NR61 685 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 INPP5EQ9NRR6 644 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 ACOXLQ9NUZ1 547 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 ERVK13-1Q9NX77 482 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 MRPL15Q9P015 296 aaKnown RBP14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 IL19Q9UHD0 177 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 OR52A1Q9UKL2 312 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 GTF2A1LQ9UNN4 478 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 SNX5Q9Y5X3 404 aa14.04□□□□□ -0.16
CCDC28A-202ENST00000611852 IGHV1-69-2A0A0G2JMI3 117 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 VWC2LB2RUY7 222 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 H7C1Q1 480 aa14.03□□□□□ -0.16
CCDC28A-202ENST00000611852 CDC14BO60729 498 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms