RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MRPL15Q9P015 296 aaKnown RBP13.66□□□□□ -0.22
TRIM28-206ENST00000595974 LAMP5Q9UJQ1 280 aa13.66□□□□□ -0.22
TRIM28-206ENST00000595974 LRRC30A6NM36 301 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 GMDSO60547 372 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 EPHA2P29317 976 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 PSMA6P60900 246 aaKnown RBP13.65□□□□□ -0.22
TRIM28-206ENST00000595974 FAM57BQ71RH2 274 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 KLBQ86Z14 1044 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 C1orf87Q8N0U7 546 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 MUC20Q8N307 709 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-206ENST00000595974 KLHL36Q8N4N3 616 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 OR56B2PQ8NGI1 322 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 TMEM163Q8TC26 289 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 ERGIC1Q969X5 290 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 TEAD3Q99594 435 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 GABARAPL3Q9BY60 117 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 OR10A2Q9H208 303 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 RGCCQ9H4X1 137 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 UBAP1Q9NZ09 502 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 KLHDC2Q9Y2U9 406 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 N6AMT1Q9Y5N5 214 aa13.65□□□□□ -0.22
TRIM28-206ENST00000595974 MXRA5Q9NR99 2828 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 SLC22A31A6NKX4 558 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 M0R129 80 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 SBK2P0C263 348 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 ALOX5APP20292 161 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 CA6P23280 308 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 THBS2P35442 1172 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 MDH2P40926 338 aaKnown RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 EFNB1P98172 346 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 HNRNPA0Q13151 305 aaKnown RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 MAB21L1Q13394 359 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 ZMYND11Q15326 602 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 NXNL2Q5VZ03 156 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 KCTD18Q6PI47 426 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 LRRN1Q6UXK5 716 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 MOGAT3Q86VF5 341 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 LRRC28Q86X40 367 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 C10orf67Q8IYJ2 551 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 TCEANCQ8N8B7 351 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 SPERTQ8NA61 448 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF420Q8TAQ5 688 aaPredicted RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 Q8TCH9 128 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 REEP6Q96HR9 211 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 PGAM5Q96HS1 289 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 CNN2Q99439 309 aaKnown RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 RBM4BQ9BQ04 359 aaKnown RBP13.64□□□□□ -0.23
TRIM28-206ENST00000595974 PCDHB10Q9UN67 800 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 TMEM14AQ9Y6G1 99 aa13.64□□□□□ -0.23
TRIM28-206ENST00000595974 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-206ENST00000595974 hCG_38984A0A1B0GV85 526 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 SAC3D1A6NKF1 404 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 H3BNX3 289 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 PLPP2O43688 288 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 FSTL3O95633 263 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 PNPP00491 289 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 MRPL3P09001 348 aaKnown RBP13.63□□□□□ -0.23
TRIM28-206ENST00000595974 FAM3AP98173 230 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 MZT1Q08AG7 82 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 AADACL4Q5VUY2 407 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 DEGS2Q6QHC5 323 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 MEPCEQ7L2J0 689 aaKnown RBP13.63□□□□□ -0.23
TRIM28-206ENST00000595974 KRT77Q7Z794 578 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 GID4Q8IVV7 300 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 PLPP7Q8NBV4 271 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 OR11L1Q8NGX0 322 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 ASB17Q8WXJ9 295 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 SGK3Q96BR1 496 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 PKP2Q99959 881 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 PATZ1Q9HBE1 687 aaKnown RBP13.63□□□□□ -0.23
TRIM28-206ENST00000595974 BRD7Q9NPI1 651 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 G6PC2Q9NQR9 355 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 H2AFY2Q9P0M6 372 aaPredicted RBP13.63□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF391Q9UJN7 358 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 LRP12Q9Y561 859 aa13.63□□□□□ -0.23
TRIM28-206ENST00000595974 A0A0G2JMP0 313 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 IGHV3-64DA0A0J9YX35 117 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 A0A0X1KG70 313 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 ANKRD30BLA7E2S9 258 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 F5H0A9 414 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 FOXH1O75593 365 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 PTBP3O95758 552 aaKnown RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 CYB5R3P00387 301 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 IRF2P14316 349 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 GATA3P23771 443 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 CPT2P23786 658 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 SRP14P37108 136 aaKnown RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 SNCBQ16143 134 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 GFOD2Q3B7J2 385 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 ZNF771Q7L3S4 317 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 OR4M2Q8NGB6 313 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 RAB3IPQ96QF0 476 aaPredicted RBP13.62□□□□□ -0.23
TRIM28-206ENST00000595974 IL4I1Q96RQ9 567 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 MNTQ99583 582 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 RIBC2Q9H4K1 309 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 FN3KRPQ9HA64 309 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 COL6A5A8TX70 2615 aa13.62□□□□□ -0.23
TRIM28-206ENST00000595974 J3QLI3 93 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 PHYHO14832 338 aa13.61□□□□□ -0.23
TRIM28-206ENST00000595974 FAM20BO75063 409 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms