RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 UCP2P55851 309 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 LSM3P62310 102 aaKnown RBP13.21□□□□□ -0.29
SS18-215ENST00000580642 RIPPLY1Q0D2K3 151 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 SPCS2Q15005 226 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 OR8B8Q15620 311 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 TMEM108Q6UXF1 575 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 FBXW12Q6X9E4 464 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 COMMD2Q86X83 199 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 CDH26Q8IXH8 852 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 FTMTQ8N4E7 242 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 OR5D14Q8NGL3 314 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 OR14K1Q8NGZ2 314 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 DYNC2LI1Q8TCX1 351 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 REEP6Q96HR9 211 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 TECTBQ96PL2 329 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 REPIN1Q9BWE0 567 aaKnown RBP13.21□□□□□ -0.29
SS18-215ENST00000580642 NEK6Q9HC98 313 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 TCF7L1Q9HCS4 588 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 NOX4Q9NPH5 578 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 A0A1W2PPW3 197 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 A0A1W2PR80 420 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 CASKO14936 926 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 PIN1P1O15428 100 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 C1QL1O75973 258 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 AGFG2O95081 481 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 ERCC1P07992 297 aaPredicted RBP13.2□□□□□ -0.3
SS18-215ENST00000580642 SELEP16581 610 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 THBS4P35443 961 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 WNT5AP41221 380 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 UQCRFS1P47985 274 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 RORCP51449 518 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 NAAAQ02083 359 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 DYNC1I2Q13409 638 aaKnown RBP13.2□□□□□ -0.3
SS18-215ENST00000580642 DGUOKQ16854 277 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 GLYATL3Q5SZD4 288 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 UTS2BQ765I0 119 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 CSNK2A3Q8NEV1 391 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 SEMA6DQ8NFY4 1073 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 OR51A4Q8NGJ6 313 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 OR13C5Q8NGS8 318 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 OR10AC1Q8NH08 325 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 SLC25A46Q96AG3 418 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 RADILQ96JH8 1075 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 ZCCHC4Q9H5U6 513 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 PLEKHA1Q9HB21 404 aa13.2□□□□□ -0.3
SS18-215ENST00000580642 ESPL1Q14674 2120 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 IGHV2OR16-5A0A0B4J2B6 119 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 hCG_38984A0A1B0GV85 526 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 FAM90A27PA6NNH2 459 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 SMPD2O60906 423 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 CDRT1O95170 752 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 CD37P11049 281 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 RAC2P15153 192 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 ZNF20P17024 532 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 IGFBP3P17936 291 aaPredicted RBP13.19□□□□□ -0.3
SS18-215ENST00000580642 CFPP27918 469 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 SDC2P34741 201 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 SOX2P48431 317 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 RPS23P62266 143 aaKnown RBP13.19□□□□□ -0.3
SS18-215ENST00000580642 PPP3R1P63098 170 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 FAM3AP98173 230 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 TFF3Q07654 80 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 INSL4Q14641 139 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 ODF4Q2M2E3 257 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 ZNF529Q6P280 563 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 MRPL21Q7Z2W9 205 aaKnown RBP13.19□□□□□ -0.3
SS18-215ENST00000580642 NKAIN3Q8N8D7 197 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 NDNFQ8TB73 568 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 ITLN2Q8WWU7 325 aaPredicted RBP13.19□□□□□ -0.3
SS18-215ENST00000580642 AP3S1Q92572 193 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 LYZL4Q96KX0 146 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 MRI1Q9BV20 369 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 PPIL3Q9H2H8 161 aaKnown RBP13.19□□□□□ -0.3
SS18-215ENST00000580642 ABCB9Q9NP78 766 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 N6AMT1Q9Y5N5 214 aa13.19□□□□□ -0.3
SS18-215ENST00000580642 KALRNO60229 2985 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 CELA3BP08861 270 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 CCL2P13500 99 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 RAB3BP20337 219 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 CD40P25942 277 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 GNALP38405 381 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 RPS19P39019 145 aaKnown RBP13.18□□□□□ -0.3
SS18-215ENST00000580642 GSK3AP49840 483 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 ZNF83P51522 516 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 PPP1CBP62140 327 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 ZNF92Q03936 586 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 PAQR4Q8N4S7 273 aaPredicted RBP13.18□□□□□ -0.3
SS18-215ENST00000580642 PIGTQ969N2 578 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 FGGYQ96C11 551 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 FOXRED1Q96CU9 486 aaPredicted RBP13.18□□□□□ -0.3
SS18-215ENST00000580642 KCTD12Q96CX2 325 aaKnown RBP13.18□□□□□ -0.3
SS18-215ENST00000580642 FAM71F1Q96KD3 344 aaPredicted RBP13.18□□□□□ -0.3
SS18-215ENST00000580642 STARD10Q9Y365 291 aa13.18□□□□□ -0.3
SS18-215ENST00000580642 NOTOA8MTQ0 251 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 M0R1B8 84 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 NGFP01138 241 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 ALDOBP05062 364 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 THBDP07204 575 aa13.17□□□□□ -0.3
SS18-215ENST00000580642 ZNF182P17025 639 aaPredicted RBP13.17□□□□□ -0.3
SS18-215ENST00000580642 RAB3AP20336 220 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms