RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CMC4P56277 68 aaPredicted RBP2.7□□□□□ -1.98
SS18-214ENST00000580003 IHHQ14623 411 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 CD300LGQ6UXG3 332 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 NT5DC3Q86UY8 548 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 OR9G4Q8NGQ1 327 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 RXFP4Q8TDU9 374 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 ACTR3CQ9C0K3 210 aaPredicted RBP2.7□□□□□ -1.98
SS18-214ENST00000580003 ANKRA2Q9H9E1 313 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 RRAGDQ9NQL2 400 aaPredicted RBP2.7□□□□□ -1.98
SS18-214ENST00000580003 RGS18Q9NS28 235 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 LRRC42Q9Y546 428 aa2.7□□□□□ -1.98
SS18-214ENST00000580003 IGKV1-27A0A075B6S5 117 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 GOLGA8OA6NCC3 632 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 ZNF878C9JN71 531 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 GOLGA8NF8WBI6 632 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 RAD1O60671 282 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 OTX1P32242 354 aaPredicted RBP2.69□□□□□ -1.98
SS18-214ENST00000580003 PFN2P35080 140 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 PCK1P35558 622 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 MRPL19P49406 292 aaKnown RBP2.69□□□□□ -1.98
SS18-214ENST00000580003 IFITM3Q01628 133 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 BTN1A1Q13410 526 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 LUZP6Q538Z0 58 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 HCP5Q6MZN7 132 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 TBPL2Q6SJ96 375 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 OPN5Q6U736 354 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 HGDQ93099 445 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 RERGQ96A58 199 aaPredicted RBP2.69□□□□□ -1.98
SS18-214ENST00000580003 PLIN2Q99541 437 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 KCNS3Q9BQ31 491 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 ZYG11BQ9C0D3 744 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 LINC00574Q9H8X3 128 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 AGPAT4Q9NRZ5 378 aa2.69□□□□□ -1.98
SS18-214ENST00000580003 FARSAQ9Y285 508 aaKnown RBP2.69□□□□□ -1.98
SS18-214ENST00000580003 GABRPO00591 440 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 SLC9A3R1O14745 358 aaPredicted RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 FGFR1OPO95684 399 aaKnown RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 HBE1P02100 147 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 CD28P10747 220 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 BCKDHBP21953 392 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 USF1P22415 310 aaPredicted RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 PRKACBP22694 351 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 GTF2E2P29084 291 aaKnown RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 CD70P32970 193 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 LIPEQ05469 1076 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 ZNF829Q3KNS6 432 aaPredicted RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 DEFB134Q4QY38 66 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 PRAMEF20Q5VT98 475 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 SPESP1Q6UW49 350 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 TMPRSS11AQ6ZMR5 421 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 USP50Q70EL3 339 aaPredicted RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 TTC29Q8NA56 475 aaPredicted RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 BPIFCQ8NFQ6 507 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 KCNS1Q96KK3 526 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 XPO6Q96QU8 1125 aaKnown RBP2.68□□□□□ -1.98
SS18-214ENST00000580003 BEX1Q9HBH7 125 aa2.68□□□□□ -1.98
SS18-214ENST00000580003 SYNJ2BP-COX16A0A087WUM0 186 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 CENPBD1B2RD01 187 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 MPHOSPH10O00566 681 aaKnown RBP2.67□□□□□ -1.98
SS18-214ENST00000580003 RAB4AP20338 218 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 PBLDP30039 288 aaPredicted RBP2.67□□□□□ -1.98
SS18-214ENST00000580003 TAS2R43P59537 309 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 BIKQ13323 160 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 NAB1Q13506 487 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 ZFAND6Q6FIF0 208 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 ENKURQ8TC29 256 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 OR4K3Q96R72 315 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 TAS2R5Q9NYW4 299 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 TAS2R1Q9NYW7 299 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 TRIP11Q15643 1979 aa2.67□□□□□ -1.98
SS18-214ENST00000580003 M0R3G1 203 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 TGM6O95932 706 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 PGA5P0DJD9 388 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 GCSAMLQ5JQS6 135 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 ARMC12Q5T9G4 340 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 HORMAD1Q86X24 394 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 OR4C5Q8NGB2 326 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 C18orf15Q96N68 181 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 PIGUQ9H490 435 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 ADGRA3Q8IWK6 1321 aa2.66□□□□□ -1.98
SS18-214ENST00000580003 PGA4P0DJD7 388 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 PGA3P0DJD8 388 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 RGS8P57771 180 aaPredicted RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 Q6ZSR6 202 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 CENPQQ7L2Z9 268 aaPredicted RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 CDS1Q92903 461 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 ZBED3Q96IU2 234 aaPredicted RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 TGS1Q96RS0 853 aaKnown RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 ZNF442Q9H7R0 627 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 CLN6Q9NWW5 311 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 HPCAL4Q9UM19 191 aa2.65□□□□□ -1.99
SS18-214ENST00000580003 YARS2Q9Y2Z4 477 aaKnown RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 FBN1P35555 2871 aaKnown RBP2.65□□□□□ -1.99
SS18-214ENST00000580003 J3QRE1 110 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 NME4O00746 187 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 CCNB2O95067 398 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 SCELO95171 688 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 ZNF35P13682 527 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 ILKQ13418 452 aa2.64□□□□□ -1.99
SS18-214ENST00000580003 HSDL1Q3SXM5 330 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms