RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ITFG2Q969R8 447 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 SPSB4Q96A44 273 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 SOX7Q9BT81 388 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 NXF2Q9GZY0 626 aaKnown RBP11.85□□□□□ -0.51
CCDC40-209ENST00000573474 MMP27Q9H306 513 aa11.85□□□□□ -0.51
CCDC40-209ENST00000573474 ERRFI1Q9UJM3 462 aaPredicted RBP11.85□□□□□ -0.51
CCDC40-209ENST00000573474 A0A075B6Q4 140 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 TRAV8-7A0A075B6U6 113 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 SMIM30A4D0T7 59 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 ANKRD61A6NGH8 418 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 DHRS7CA6NNS2 312 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 NOTOA8MTQ0 251 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 LMX1BO60663 402 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 ICMTO60725 284 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 NCR1O76036 304 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 IGFBP3P17936 291 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-209ENST00000573474 GNALP38405 381 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 DDOSTP39656 456 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 WNT5AP41221 380 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 PSMD7P51665 324 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 CAV3P56539 151 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 TLE1Q04724 770 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 TAB1Q15750 504 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 CEP78Q5JTW2 689 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 LRRTM1Q86UE6 522 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 MYPOPQ86VE0 399 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-209ENST00000573474 OR2AE1Q8NHA4 323 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 PRR7Q8TB68 274 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 AP3S1Q92572 193 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 C10orf35Q96D05 121 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 ADAT3Q96EY9 351 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-209ENST00000573474 CCDC120Q96HB5 630 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 ZCCHC4Q9H5U6 513 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 OPA3Q9H6K4 179 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 TAS2R4Q9NYW5 299 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 PLEKHB1Q9UF11 243 aaPredicted RBP11.84□□□□□ -0.51
CCDC40-209ENST00000573474 STARD10Q9Y365 291 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 AK6Q9Y3D8 172 aaKnown RBP11.84□□□□□ -0.51
CCDC40-209ENST00000573474 CACNA1BQ00975 2339 aa11.84□□□□□ -0.51
CCDC40-209ENST00000573474 IGHV1-18A0A0C4DH31 117 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 A0A0G2JK05 382 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 MEGF11A6BM72 1044 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 NGFP01138 241 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 CECR9P0C854 216 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 PPP3CBP16298 524 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 GNLYP22749 145 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 THBS4P35443 961 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 MAP2K3P46734 347 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 GSK3AP49840 483 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 PPP3R1P63098 170 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 ZNF92Q03936 586 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 RIPPLY1Q0D2K3 151 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 IGFBP7Q16270 282 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 FBXL19-AS1Q494R0 122 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 C4orf17Q53FE4 359 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 PGAP1Q75T13 922 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 NR2C2APQ86WQ0 139 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 SEMA6DQ8NFY4 1073 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 LRRC46Q96FV0 321 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 REPIN1Q9BWE0 567 aaKnown RBP11.83□□□□□ -0.52
CCDC40-209ENST00000573474 PLEKHA1Q9HB21 404 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 PIGLQ9Y2B2 252 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 V9GY05 133 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 IGSF10Q6WRI0 2623 aa11.83□□□□□ -0.52
CCDC40-209ENST00000573474 hCG_38984A0A1B0GV85 526 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ANXA2P2A6NMY6 339 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 B8ZZF3 427 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 TMEM127O75204 238 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 MAS1P04201 325 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 EPXP11678 715 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ZNF35P13682 527 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ADRA2CP18825 462 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 CCKARP32238 428 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ZNF83P51522 516 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 OR10A3P58181 314 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 FAM3AP98173 230 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ASPHD2Q6ICH7 369 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ZNF529Q6P280 563 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 SFXN4Q6P4A7 337 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 UNQ6126/PRO20091Q6UXV3 157 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 LINC00299Q6ZSB3 139 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 MRPL21Q7Z2W9 205 aaKnown RBP11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ZNF101Q8IZC7 436 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 OR1M1Q8NGA1 313 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 TBC1D15Q8TC07 691 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 ACOT12Q8WYK0 555 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 PP6455Q8WZ26 134 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 RNASE6Q93091 150 aaKnown RBP11.82□□□□□ -0.52
CCDC40-209ENST00000573474 KCTD12Q96CX2 325 aaKnown RBP11.82□□□□□ -0.52
CCDC40-209ENST00000573474 GFI1Q99684 422 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 PTTG3PQ9NZH4 202 aa11.82□□□□□ -0.52
CCDC40-209ENST00000573474 RTTNQ86VV8 2226 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 IGHV2OR16-5A0A0B4J2B6 119 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 A6NIN4 97 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 FAM90A27PA6NNH2 459 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 M0R1B8 84 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 SMPD2O60906 423 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 FAHP16930 419 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 RAB3AP20336 220 aa11.81□□□□□ -0.52
CCDC40-209ENST00000573474 TUBG1P23258 451 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms