RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ASPHD2Q6ICH7 369 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 RGS7BPQ6MZT1 257 aaPredicted RBP7.93□□□□□ -1.14
VPS35-211ENST00000569950 KCTD20Q7Z5Y7 419 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 TMEM200AQ86VY9 491 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 MUC15Q8N387 334 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 YIPF7Q8N8F6 280 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 GATAD2BQ8WXI9 593 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 PGLYRP3Q96LB9 341 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 LURAP1Q96LR2 239 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 SYT3Q9BQG1 590 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 UBTD1Q9HAC8 227 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 BRD7Q9NPI1 651 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 PURGQ9UJV8 347 aaKnown RBP7.93□□□□□ -1.14
VPS35-211ENST00000569950 OR52A1Q9UKL2 312 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 LRCH1Q9Y2L9 728 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 ACANP16112 2415 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 CREBBPQ92793 2442 aa7.93□□□□□ -1.14
VPS35-211ENST00000569950 HIVEP1P15822 2718 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 IQCF6A8MYZ5 107 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 LOC110117498-PIK3R3F6TDL0 507 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 MLNRO43193 412 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 RGS10O43665 173 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 NDUFS7O75251 213 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 ZFPL1O95159 310 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 ANXA2P07355 339 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 SMIM18P0DKX4 95 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 TUBG1P23258 451 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 RBMXP38159 391 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 TGM4P49221 684 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 EVX1P49640 407 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 CCR9P51686 369 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 RPS23P62266 143 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 ACSM1Q08AH1 577 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 CDK5R1Q15078 307 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 TAF13Q15543 124 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 DMKNQ6E0U4 476 aaPredicted RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 OR2T2Q6IF00 324 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 KLBQ86Z14 1044 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 KRTAP1-3Q8IUG1 177 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 RDH10Q8IZV5 341 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 SPARTQ8N0X7 666 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 ZCCHC24Q8N2G6 241 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 OR52H1Q8NGJ2 320 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 OR51A4Q8NGJ6 313 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 SYNPRQ8TBG9 265 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 OR51E1Q8TCB6 317 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 SNX33Q8WV41 574 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 REEP6Q96HR9 211 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 KCNS3Q9BQ31 491 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 YTHDF1Q9BYJ9 559 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 Q9H521 79 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 GPR84Q9NQS5 396 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 TUBG2Q9NRH3 451 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 CBLN4Q9NTU7 201 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 BABAM2Q9NXR7 383 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 SCN3BQ9NY72 215 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 EIF3KQ9UBQ5 218 aaKnown RBP7.92□□□□□ -1.14
VPS35-211ENST00000569950 POU2F3Q9UKI9 436 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 TPRKBQ9Y3C4 175 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 CMAHPQ9Y471 501 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 SNX5Q9Y5X3 404 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 V9GYS6 101 aa7.92□□□□□ -1.14
VPS35-211ENST00000569950 DYSFO75923 2080 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 MED13LQ71F56 2210 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 LOC390937A0A1W2PQ73 354 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 CD300LBA8K4G0 201 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 B9A039 149 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 P2RY10O00398 339 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 XRCC2O43543 280 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 NCR1O76036 304 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 APOC1P02654 83 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 MT-ND5P03915 603 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ISG15P05161 165 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ADH4P08319 380 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 PAX1P15863 534 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ALDH3B1P43353 468 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 MAGEB1P43366 347 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 GSK3AP49840 483 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 WNT4P56705 351 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 KLF3P57682 345 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 EMX1Q04741 257 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 ALKBH1Q13686 389 aaKnown RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 TBCEQ15813 527 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 ZNF829Q3KNS6 432 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 ZNF718Q3SXZ3 478 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 BCL2L15Q5TBC7 163 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 TMEM42Q69YG0 159 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 CRIP3Q6Q6R5 217 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 C20orf204Q6ZNR8 217 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 C1orf174Q8IYL3 243 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 STX19Q8N4C7 294 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 KLHL36Q8N4N3 616 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ZFP41Q8N8Y5 198 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 OR56B2PQ8NGI1 322 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 OR14K1Q8NGZ2 314 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 UBASH3BQ8TF42 649 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 MYDGFQ969H8 173 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 PGAM5Q96HS1 289 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 OPALINQ96PE5 141 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms