RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 C9orf16Q9BUW7 83 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 AMBNQ9NP70 447 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 MYOZ1Q9NP98 299 aaPredicted RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 ZNF275Q9NSD4 429 aaPredicted RBP11.74□□□□□ -0.53
CLN3-235ENST00000568497 LAMP5Q9UJQ1 280 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 PCDHB10Q9UN67 800 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 LRP12Q9Y561 859 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 ARHGAP32A7KAX9 2087 aa11.74□□□□□ -0.53
CLN3-235ENST00000568497 F5H5P2 479 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 MLNRO43193 412 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 PRODHO43272 600 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 ICMTO60725 284 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 MVKQ03426 396 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 SLC35D3Q5M8T2 416 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 FAM201AQ5SY85 155 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 ARL9Q6T311 187 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 C19orf18Q8NEA5 215 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 ZNF420Q8TAQ5 688 aaPredicted RBP11.73□□□□□ -0.53
CLN3-235ENST00000568497 ITLN1Q8WWA0 313 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 SGK3Q96BR1 496 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 ELMOD3Q96FG2 381 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 DCLRE1CQ96SD1 692 aaKnown RBP11.73□□□□□ -0.53
CLN3-235ENST00000568497 CNN2Q99439 309 aaKnown RBP11.73□□□□□ -0.53
CLN3-235ENST00000568497 TEX12Q9BXU0 123 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 H2AFY2Q9P0M6 372 aaPredicted RBP11.73□□□□□ -0.53
CLN3-235ENST00000568497 IKZF2Q9UKS7 526 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 ORC6Q9Y5N6 252 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 GMPPBQ9Y5P6 360 aa11.73□□□□□ -0.53
CLN3-235ENST00000568497 PPIHO43447 177 aaKnown RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 RP2O75695 350 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 PNPP00491 289 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 OTX1P32242 354 aaPredicted RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 CHN2P52757 468 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 HILS1P60008 231 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 CXCR4P61073 352 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 TNFAIP6P98066 277 aaPredicted RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 ECH1Q13011 328 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 SMN1Q16637 294 aaKnown RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 PRAMEF6Q5VXH4 476 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 NXNL2Q5VZ03 156 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 PRSS45Q7RTY3 260 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 MRPL21Q7Z2W9 205 aaKnown RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 KRT77Q7Z794 578 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 OR10H4Q8NGA5 316 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 OR56B2PQ8NGI1 322 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 NEU4Q8WWR8 484 aaPredicted RBP11.72□□□□□ -0.53
CLN3-235ENST00000568497 CCL17Q92583 94 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 HPS1Q92902 700 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 PGAM5Q96HS1 289 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 LYZL4Q96KX0 146 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 MS4A5Q9H3V2 200 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 LPAR2Q9HBW0 351 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 DECR2Q9NUI1 292 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 FAM118AQ9NWS6 357 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 IMPAD1Q9NX62 359 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 GTF2A1LQ9UNN4 478 aa11.72□□□□□ -0.53
CLN3-235ENST00000568497 PLSCR5A0PG75 271 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 GGT3PA6NGU5 568 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 RPP14O95059 124 aaKnown RBP11.71□□□□□ -0.53
CLN3-235ENST00000568497 SBK2P0C263 348 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 KITLGP21583 273 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 CA6P23280 308 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 PSMB10P40306 273 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 PMELP40967 661 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 RAD23AP54725 363 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 ODF4Q2M2E3 257 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 LCN1P1Q5VSP4 162 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 DRAM2Q6UX65 266 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 FBXW12Q6X9E4 464 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 PGAP1Q75T13 922 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 C10orf67Q8IYJ2 551 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 ENTHD1Q8IYW4 607 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 ZNF786Q8N393 782 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 OR8B12Q8NGG6 310 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 APH1BQ8WW43 257 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 NRG4Q8WWG1 115 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 CYGBQ8WWM9 190 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 RNFT2Q96EX2 444 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 REEP6Q96HR9 211 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 HRASLS5Q96KN8 279 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 JMJD8Q96S16 334 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 ZNF747Q9BV97 191 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 SAP30LQ9HAJ7 183 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 MRM2Q9UI43 246 aaKnown RBP11.71□□□□□ -0.53
CLN3-235ENST00000568497 ATPIF1Q9UII2 106 aa11.71□□□□□ -0.53
CLN3-235ENST00000568497 LOC100130705A0A1B0GUX0 176 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 A0A1W2PQL4 384 aaPredicted RBP11.7□□□□□ -0.54
CLN3-235ENST00000568497 A6NIN4 97 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 CD300LBA8K4G0 201 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 RAC2P15153 192 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 GABRB1P18505 474 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 HTR1FP30939 366 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 RGS6P49758 472 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 BLVRAP53004 296 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 CDH15P55291 814 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 CDC42P60953 191 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 GRB2P62993 217 aaKnown RBP11.7□□□□□ -0.54
CLN3-235ENST00000568497 ZNF85Q03923 595 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 CDK5R2Q13319 367 aa11.7□□□□□ -0.54
CLN3-235ENST00000568497 RIN1Q13671 783 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms