RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C17orf107Q6ZR85 190 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 ZDHHC22Q8N966 263 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 SEC22AQ96IW7 307 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF471Q9BX82 626 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 RAB22AQ9UL26 194 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 VSIG4Q9Y279 399 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 TMED7Q9Y3B3 224 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 DMRT1Q9Y5R6 373 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 LOC107986453A0A1B0GWG9 222 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 RNF222A6NCQ9 220 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 EIF1AYO14602 144 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 IL2RAP01589 272 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 DLSTP36957 453 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 NBL1P41271 181 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 EIF1AXP47813 144 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 FOXL2P58012 376 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 DEFA5Q01523 94 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 MC2RQ01718 297 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 TRA2AQ13595 282 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 SNTB1Q13884 538 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 NKPD1Q17RQ9 610 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 HYAL4Q2M3T9 481 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 CDNFQ49AH0 187 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 TMEM244Q5VVB8 128 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 HLA-DQA1Q5Y7H0 255 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 OR10K2Q6IF99 312 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 RHBDD2Q6NTF9 364 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 C3orf33Q6P1S2 294 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 FAHD2BQ6P2I3 314 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 UQCC3Q6UW78 93 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 OR2W3Q7Z3T1 314 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 PPP1R3BQ86XI6 285 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 LYPD6Q86Y78 171 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 AGBL5Q8NDL9 886 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 BPIFCQ8NFQ6 507 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 OR4S1Q8NGB4 309 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 MITD1Q8WV92 249 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 GTF3AQ92664 365 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 FAHD2AQ96GK7 314 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 PIGMQ9H3S5 423 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 G6PC2Q9NQR9 355 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 UFSP2Q9NUQ7 469 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 MYEF2Q9P2K5 600 aaKnown RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 GDF2Q9UK05 429 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 OR52A1Q9UKL2 312 aa11.78□□□□□ -0.52
VPS4A-204ENST00000566354 COA3Q9Y2R0 106 aaPredicted RBP11.78□□□□□ -0.52
VPS4A-204ENST00000566354 TSPAN2O60636 221 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 CRTAPO75718 401 aaPredicted RBP11.77□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF823P16415 610 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF260Q3ZCT1 412 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 LRRC37A5PQ49AS3 106 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 CD163Q86VB7 1156 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 PRSS58Q8IYP2 241 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 THAP6Q8TBB0 222 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 ZNF75AQ96N20 296 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 PHB2Q99623 299 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 SLC22A11Q9NSA0 550 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 PLEKHA6Q9Y2H5 1048 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 FAM186AA6NE01 2351 aa11.77□□□□□ -0.52
VPS4A-204ENST00000566354 IGKV3D-11A0A0A0MRZ8 115 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 RAB19A4D1S5 217 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 CDC14CA4D256 554 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 C17orf51A8MQB3 221 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 PRSS47A8MTI9 375 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 RAB27BO00194 218 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 CCSO14618 274 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 TO15178 435 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 OR2T1O43869 369 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 LRP3O75074 770 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 MPZL1O95297 269 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 S100A8P05109 93 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 CSN2P05814 226 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 HEXBP07686 556 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 H2AFB1P0C5Y9 115 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 FBLP22087 321 aaKnown RBP11.77□□□□□ -0.53
VPS4A-204ENST00000566354 PRKXP51817 358 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 EFNA3P52797 238 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 ATP1B3P54709 279 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 IL13RA1P78552 427 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 PPP1R1AQ13522 171 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 EBPQ15125 230 aaKnown RBP11.77□□□□□ -0.53
VPS4A-204ENST00000566354 ELAVL1Q15717 326 aaKnown RBP11.77□□□□□ -0.53
VPS4A-204ENST00000566354 DEGS2Q6QHC5 323 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 FJX1Q86VR8 437 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 INO80EQ8NBZ0 244 aaPredicted RBP11.77□□□□□ -0.53
VPS4A-204ENST00000566354 ACBD4Q8NC06 268 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 ZNF248Q8NDW4 579 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 TMEM185AQ8NFB2 350 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 OR4D6Q8NGJ1 314 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 TSLPQ969D9 159 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 NKX6-2Q9C056 277 aaPredicted RBP11.77□□□□□ -0.53
VPS4A-204ENST00000566354 NRSN2Q9GZP1 204 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 CTSFQ9UBX1 484 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 SRPK3Q9UPE1 567 aa11.77□□□□□ -0.53
VPS4A-204ENST00000566354 PTPRZ1P23471 2315 aaPredicted RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 TMEM269A0A1B0GVZ9 245 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 C9orf170A2RU37 121 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 A6NIZ1 184 aa11.76□□□□□ -0.53
VPS4A-204ENST00000566354 NDUFS6O75380 124 aaKnown RBP11.76□□□□□ -0.53
VPS4A-204ENST00000566354 WISP1O95388 367 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms