RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MUCL1Q96DR8 90 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ZNF681Q96N22 645 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 SCRT1Q9BWW7 348 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 KCNJ16Q9NPI9 418 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ZDHHC8Q9ULC8 765 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 ADAMTS9Q9P2N4 1935 aa9.73□□□□□ -0.85
USP3-206ENST00000558157 A0A0B4J2E0 115 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 A0A1B0GX12 115 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 MSGN1A6NI15 193 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 GLOD5A6NK44 160 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ZNF726A6NNF4 738 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 KCNAB3O43448 404 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 CFIP05156 583 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 CD37P11049 281 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 FGF7P21781 194 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 HIST1H1TP22492 207 aaPredicted RBP9.72□□□□□ -0.85
USP3-206ENST00000558157 NKX6-1P78426 367 aaPredicted RBP9.72□□□□□ -0.85
USP3-206ENST00000558157 DUSP2Q05923 314 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 KIR2DS3Q14952 304 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 USF2Q15853 346 aaPredicted RBP9.72□□□□□ -0.85
USP3-206ENST00000558157 OR2A2Q6IF42 318 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ZNF529Q6P280 563 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 OPN5Q6U736 354 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ZNF627Q7L945 461 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 SLC16A11Q8NCK7 471 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 LFNGQ8NES3 379 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 OR9A2Q8NGT5 310 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 TERB2Q8NHR7 220 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 CASTOR1Q8WTX7 329 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 SDF2Q99470 211 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 RAB33BQ9H082 229 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ADAP2Q9NPF8 381 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 MRM2Q9UI43 246 aaKnown RBP9.72□□□□□ -0.85
USP3-206ENST00000558157 WASF3Q9UPY6 502 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 TMED7Q9Y3B3 224 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ENTPD2Q9Y5L3 495 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 IER3IP1Q9Y5U9 82 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 PATE3B3GLJ2 98 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 RAB27BO00194 218 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 DAOP14920 347 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ZNF28P17035 718 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 PI4KAP42356 2102 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 FASLGP48023 281 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 SLC25A1P53007 311 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 PPP1CAP62136 330 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 EGR3Q06889 387 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 PMPCAQ10713 525 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 CLINT1Q14677 625 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 UBE2V2Q15819 145 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 TMEM128Q5BJH2 165 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 LINC01590Q5TEZ4 76 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 C17orf82Q86X59 251 aaPredicted RBP9.72□□□□□ -0.85
USP3-206ENST00000558157 SLC25A45Q8N413 288 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 LRRC18Q8N456 261 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 RCBTB1Q8NDN9 531 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 CCDC54Q8NEL0 328 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 RNF128Q8TEB7 428 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 MR1Q95460 341 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 SLC22A18Q96BI1 424 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 PDE7BQ9NP56 450 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 ATG4BQ9Y4P1 393 aa9.72□□□□□ -0.85
USP3-206ENST00000558157 MARCH11A6NNE9 402 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 RPP14O95059 124 aaKnown RBP9.71□□□□□ -0.85
USP3-206ENST00000558157 GPANK1O95872 356 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 MBP02144 154 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 PMP2P02689 132 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 F13BP05160 661 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 GIMD1P0DJR0 217 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 OR8G3PP0DMU2 310 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 CHATP28329 748 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 EPHA8P29322 1005 aaPredicted RBP9.71□□□□□ -0.85
USP3-206ENST00000558157 BCL6P41182 706 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 ZNF84P51523 738 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 SUCLG1P53597 346 aaKnown RBP9.71□□□□□ -0.85
USP3-206ENST00000558157 TNFRSF9Q07011 255 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 KHDC3LQ587J8 217 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 RPL7L1Q6DKI1 246 aaKnown RBP9.71□□□□□ -0.85
USP3-206ENST00000558157 FDX2Q6P4F2 183 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 OGFOD3Q6PK18 319 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 SLC22A25Q6T423 547 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 MDGA2Q7Z553 956 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 ADGRE4PQ86SQ3 457 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 OOSP2Q86WS3 158 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 MRGPRFQ96AM1 343 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 ALG12Q9BV10 488 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 SIRT7Q9NRC8 400 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 HRASLS2Q9NWW9 162 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 KLK13Q9UKR3 277 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 MEMO1Q9Y316 297 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 PCDH15Q96QU1 1955 aa9.71□□□□□ -0.85
USP3-206ENST00000558157 DVL1O14640 695 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BKO60814 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 STATHP02808 62 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BJP06899 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 ST6GAL1P15907 406 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 RAB6AP20340 208 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BOP23527 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 CXCR1P25024 350 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 HIST1H2BBP33778 126 aa9.71□□□□□ -0.86
USP3-206ENST00000558157 PTGER1P34995 402 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms