RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RPH3AQ9Y2J0 694 aaPredicted RBP10.97□□□□□ -0.65
LDLR-205ENST00000557933 PCDHGA1Q9Y5H4 931 aa10.97□□□□□ -0.65
LDLR-205ENST00000557933 ATXN7O15265 892 aaPredicted RBP10.96□□□□□ -0.65
LDLR-205ENST00000557933 ZNHIT1O43257 154 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 NME2P1O60361 137 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 ARG1P05089 322 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 OR8U9P0C7N5 309 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 ITGA3P26006 1051 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 DHPSP49366 369 aaPredicted RBP10.96□□□□□ -0.65
LDLR-205ENST00000557933 B2MP61769 119 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 CTAG1AP78358 180 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 RIPPLY1Q0D2K3 151 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 MST1LQ2TV78 715 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 TEX30Q5JUR7 227 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 NAA40Q86UY6 237 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 OR8U1Q8NH10 309 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 FAM131CQ96AQ9 280 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 ARHGAP5-AS1Q96IT6 56 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 HDHD3Q9BSH5 251 aaPredicted RBP10.96□□□□□ -0.65
LDLR-205ENST00000557933 SLC19A3Q9BZV2 496 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 ZNF581Q9P0T4 197 aa10.96□□□□□ -0.65
LDLR-205ENST00000557933 RCL1Q9Y2P8 373 aaKnown RBP10.96□□□□□ -0.65
LDLR-205ENST00000557933 CCDC163A0A0D9SF12 145 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 CRTAPO75718 401 aaPredicted RBP10.96□□□□□ -0.66
LDLR-205ENST00000557933 GP1BBP13224 206 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 RAB6AP20340 208 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 RFC3P40938 356 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 SP6Q3SY56 376 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 HLA-DQA1Q5Y7H0 255 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 PGAP1Q75T13 922 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 C9orf40Q8IXQ3 194 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 STOML3Q8TAV4 291 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 GLYATL2Q8WU03 294 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 SLC25A43Q8WUT9 341 aaPredicted RBP10.96□□□□□ -0.66
LDLR-205ENST00000557933 TMEM230Q96A57 120 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 BSCL2Q96G97 398 aaPredicted RBP10.96□□□□□ -0.66
LDLR-205ENST00000557933 LIN37Q96GY3 246 aaPredicted RBP10.96□□□□□ -0.66
LDLR-205ENST00000557933 EDEM2Q9BV94 578 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 ZNF701Q9NV72 531 aaPredicted RBP10.96□□□□□ -0.66
LDLR-205ENST00000557933 ZNF319Q9P2F9 582 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 ZNF407Q9C0G0 2248 aa10.96□□□□□ -0.66
LDLR-205ENST00000557933 TRAV36DV7A0A075B6V5 113 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 A6NLC8 198 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 TNFP01375 233 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 HCKP08631 526 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 DEFB133Q30KQ1 61 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 AVPI1Q5T686 147 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 Q6ZS52 159 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 AQP3Q92482 292 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 HOXB13Q92826 284 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 REEP6Q96HR9 211 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 NRIP2Q9BQI9 281 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 IFT22Q9H7X7 185 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 NIT2Q9NQR4 276 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 PLA2G2EQ9NZK7 142 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 LSM5Q9Y4Y9 91 aaKnown RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 R4GMQ9 66 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 DCHS1Q96JQ0 3298 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 DIDO1Q9BTC0 2240 aaKnown RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 FAM221AA4D161 298 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 MBTPS2O43462 519 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 MTRF1O75570 445 aaKnown RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 TXNDC12O95881 172 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 TTRP02766 147 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 CD74P04233 296 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 IGFBP3P17936 291 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZNF93P35789 620 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZNF616Q08AN1 781 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZNF345Q14585 488 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ISXQ2M1V0 245 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 TSPO2Q5TGU0 170 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 C1QL2Q7Z5L3 287 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 RNF141Q8WVD5 230 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZNF775Q96BV0 537 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 NCOA6Q14686 2063 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 NPIPA5E9PKD4 350 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 M0R036 132 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 XRCC2O43543 280 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 FAM157CP0CG43 387 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 CLINT1Q14677 625 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 PDCD1Q15116 288 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 PEA15Q15121 130 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.95□□□□□ -0.66
LDLR-205ENST00000557933 DHRS11Q6UWP2 260 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ARHGEF39Q8N4T4 335 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZNF519Q8TB69 540 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 NECAB3Q96P71 396 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 BIN3Q9NQY0 253 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 ZFP57Q9NU63 452 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 NPIPA1Q9UND3 350 aa10.95□□□□□ -0.66
LDLR-205ENST00000557933 COLQQ9Y215 455 aaPredicted RBP10.95□□□□□ -0.66
LDLR-205ENST00000557933 DSPP15924 2871 aaKnown RBP10.94□□□□□ -0.66
LDLR-205ENST00000557933 RER1O15258 196 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 SEMA4FO95754 770 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 IL33O95760 270 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 SLC25A4P12235 298 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 ABCD3P28288 659 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 CTHP32929 405 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 PPICP45877 212 aa10.94□□□□□ -0.66
LDLR-205ENST00000557933 HOXA1P49639 335 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms