RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	OR10K1	Q8NGX5	313 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	RAB3C	Q96E17	227 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	C1orf147	Q96MC9	270 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	SPSB2	Q99619	263 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	MESP1	Q9BRJ9	268 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	URM1	Q9BTM9	101 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	BARX1	Q9HBU1	254 aa	Predicted RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	PNRC2	Q9NPJ4	139 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	GPR84	Q9NQS5	396 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	COQ3	Q9NZJ6	369 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	GHRL	Q9UBU3	117 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	SHPK	Q9UHJ6	478 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	RANBP2	P49792	3224 aa	Known RBP	11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	PCNX3	Q9H6A9	2034 aa		11.94	□□□□□ -0.5
SHMT2-222	ENST00000555774	AQP7P3	A6NL99	342 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF726	A6NNF4	738 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR2J2	O76002	312 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	DKK1	O94907	266 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	TIAF1	O95411	115 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF43	P17038	809 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	IGFBP4	P22692	258 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SLC35A1	P78382	337 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SLC22A6	Q4U2R8	563 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	COMMD2	Q86X83	199 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	CCDC36	Q8IYA8	594 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	KNL1	Q8NG31	2342 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	TERB2	Q8NHR7	220 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SPACA9	Q96E40	222 aa	Predicted RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	MRPS24	Q96EL2	167 aa	Known RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR5B2	Q96R09	309 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	CRB3	Q9BUF7	120 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	NMES1	Q9C002	83 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	GAREM1	Q9H706	876 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ASH2L	Q9UBL3	628 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774		A0A087WZY1	265 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774		A0A0A6YYD4	124 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SULT2B1	O00204	365 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	LGALS8	O00214	317 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	WDPCP	O95876	746 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	LIPC	P11150	499 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	LSM6	P62312	80 aa	Known RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	RELL2	Q8NC24	303 aa	Predicted RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	TMEM185A	Q8NFB2	350 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR4K17	Q8NGC6	315 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SSC4D	Q8WTU2	575 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	SEC22A	Q96IW7	307 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ARPC5L	Q9BPX5	153 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	OCSTAMP	Q9BR26	566 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF471	Q9BX82	626 aa	Predicted RBP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	TMEM59	Q9BXS4	323 aa		11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
SHMT2-222	ENST00000555774	LOC100509620	A0A075B734	347 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	TRBV6-7	A0A0A0MS04	114 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	TP53I11	O14683	189 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	MPIG6B	O95866	241 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	PMP2	P02689	132 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	CRH	P06850	196 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	ABO	P16442	354 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	CNR1	P21554	472 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	VAMP1	P23763	118 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	BTN1A1	Q13410	526 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	LRRC37A5P	Q49AS3	106 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	PAN3	Q58A45	887 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	TMEM128	Q5BJH2	165 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	UQCC3	Q6UW78	93 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	ADAD2	Q8NCV1	583 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	CCDC54	Q8NEL0	328 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	STOML3	Q8TAV4	291 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	TMEM41A	Q96HV5	264 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	NICN1	Q9BSH3	213 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	WDR13	Q9H1Z4	485 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	UBE2Z	Q9H832	354 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774		A0A1W2PNR3	127 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	FAM25E	A8MYX2	175 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	MFNG	O00587	321 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	HCK	P08631	526 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	QDPR	P09417	244 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	PRF1	P14222	555 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	AKR1C4	P17516	323 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	PSMB6	P28072	239 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	AVPR2	P30518	371 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	CDA	P32320	146 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	ALDH3B1	P43353	468 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	MFAP5	Q13361	173 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	SNTB1	Q13884	538 aa	Known RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	INPP5J	Q15735	1006 aa	Predicted RBP	11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	NSUN5P2	Q63ZY6	315 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZNF283	Q8N7M2	679 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	ZBTB44	Q8NCP5	570 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	OR14K1	Q8NGZ2	314 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	CASTOR1	Q8WTX7	329 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	RASL10B	Q96S79	203 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	DEFB126	Q9BYW3	111 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	FN3KRP	Q9HA64	309 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	WNT16	Q9UBV4	365 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	GPR132	Q9UNW8	380 aa		11.92	□□□□□ -0.5
SHMT2-222	ENST00000555774	IGLV3-1	P01715	115 aa		11.91	□□□□□ -0.5
SHMT2-222	ENST00000555774	FPR2	P25090	351 aa		11.91	□□□□□ -0.5

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