RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	PLA2G12A	Q9BZM1	189 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	CSN1S1	P47710	185 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ENDOG	Q14249	297 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	HES1	Q14469	280 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	TMEM128	Q5BJH2	165 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	DEGS2	Q6QHC5	323 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	THNSL2	Q86YJ6	484 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ZNF680	Q8NEM1	530 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	RDH5	Q92781	318 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	AUNIP	Q9H7T9	357 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	C12orf10	Q9HB07	376 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	MMP25	Q9NPA2	562 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	MYH14	Q7Z406	1995 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SDCBP	O00560	298 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	PLPP2	O43688	288 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	NME2P1	O60361	137 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	WDR1	O75083	606 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	COX5A	P20674	150 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	NLRC3	Q7RTR2	1065 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ETFBKMT	Q8IXQ9	262 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	UQCC2	Q9BRT2	126 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SOX7	Q9BT81	388 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	DEFB127	Q9H1M4	99 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	EXOG	Q9Y2C4	368 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	BCOR	Q6W2J9	1755 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SIRPB1	O00241	398 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	MAGEB4	O15481	346 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	NME1	P15531	152 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	DCTD	P32321	178 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	PCBP4	P57723	403 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	EXOSC2	Q13868	293 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SPANXN5	Q5MJ07	72 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	FAM162B	Q5T6X4	162 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	RPUSD3	Q6P087	351 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	BTNL8	Q6UX41	500 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	BHLHA9	Q7RTU4	235 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ZNF683	Q8IZ20	524 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ZDHHC22	Q8N966	263 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SLIRP	Q9GZT3	109 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	SLC23A1	Q9UHI7	598 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	PPP1R3C	Q9UQK1	317 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	ST3GAL6	Q9Y274	331 aa		10.41	□□□□□ -0.74
SYNE2-208	ENST00000553289	GALR2	O43603	387 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	FUT7	Q11130	342 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	PHYHD1	Q5SRE7	291 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	OR4Q3	Q8NH05	313 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	CYB5R1	Q9UHQ9	305 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	FLVCR2	Q9UPI3	526 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	TNFSF11	O14788	317 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	SSSCA1	O60232	199 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	FOSL1	P15407	271 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	CD80	P33681	288 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	PIGP	P57054	158 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	SLC25A35	Q3KQZ1	300 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ZNF468	Q5VIY5	522 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	LILRA6	Q6PI73	481 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	DBX2	Q6ZNG2	339 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ABI3BP	Q7Z7G0	1075 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289		Q8IYB0	196 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	TEX19	Q8NA77	164 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	FGF14	Q92915	247 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	WSB2	Q9NYS7	404 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	PAPPA2	Q9BXP8	1791 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	LY86	O95711	162 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	CT45A10	P0DMU9	189 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	CD37	P11049	281 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	OPRM1	P35372	400 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ERH	P84090	104 aa	Known RBP	10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ADAM5	Q6NVV9	412 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ANKRD16	Q6P6B7	361 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	GLDN	Q6ZMI3	551 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	COMMD1	Q8N668	190 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	ST8SIA4	Q92187	359 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289	TRIB1	Q96RU8	372 aa		10.4	□□□□□ -0.74
SYNE2-208	ENST00000553289		A0A0B4J203	849 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	CYC1	P08574	325 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	GABRG2	P18507	467 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	BPIFB3	P59826	476 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	SMIM21	Q3B7S5	101 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	SLC25A26	Q70HW3	274 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	CCDC71	Q8IV32	467 aa	Predicted RBP	10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	MSRB3	Q8IXL7	192 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	OCEL1	Q9H607	264 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	LRP12	Q9Y561	859 aa		10.4	□□□□□ -0.75
SYNE2-208	ENST00000553289	SLC22A20	A6NK97	555 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	LIMS3	P0CW19	117 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	LIMS4	P0CW20	117 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	RPS27	P42677	84 aa	Known RBP	10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	HAAO	P46952	286 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	RAB35	Q15286	201 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	LHX4	Q969G2	390 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	DERL3	Q96Q80	235 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	SPACA5	Q96QH8	159 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	KIAA1456	Q9P272	454 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	ZNF727	A8MUV8	499 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	TIGIT	Q495A1	244 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	OR10X1	Q8NGY0	326 aa		10.39	□□□□□ -0.75
SYNE2-208	ENST00000553289	ST8SIA2	Q92186	375 aa		10.39	□□□□□ -0.75

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