RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 A0A1B0GV90 55 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SERINC4A6NH21 518 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SDCBPO00560 298 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GPR37O15354 613 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RAD51DO75771 328 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 HLA-DOBP13765 273 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF14P17017 642 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 CXCR1P25024 350 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TACR3P29371 465 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 IL12BP29460 328 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SCAND1P57086 179 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PRPS1P60891 318 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 CCINQ13939 588 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 DEFB133Q30KQ1 61 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TEX30Q5JUR7 227 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GFI1BQ5VTD9 330 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 IL34Q6ZMJ4 242 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ADGRE4PQ86SQ3 457 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C8orf44Q96CB5 159 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 KLHDC7BQ96G42 594 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF285Q96NJ3 590 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ABHD6Q9BV23 337 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TBL1XR1Q9BZK7 514 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 METTL1Q9UBP6 276 aaKnown RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 CLDN16Q9Y5I7 305 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 DOCK8Q8NF50 2099 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 NCOR1O75376 2440 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SHANK1Q9Y566 2161 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 IGKV1D-43A0A0B4J1Z2 117 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 A0A0J9YY10 115 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C17orf105B2RV13 164 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM150CB9EJG8 249 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 H0YIG0 161 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 P2RY10O00398 339 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PLRG1O43660 514 aaKnown RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 NME2P1O60361 137 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SLC16A7O60669 478 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF205O95201 554 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 S100A8P05109 93 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 HOXB5P09067 269 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 FBP1P09467 338 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 VSIG8P0DPA2 414 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RAB5AP20339 215 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 S100PP25815 95 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ARRB1P49407 418 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 DLX2Q07687 328 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RASGEF1BQ0VAM2 473 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF141Q15928 474 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PCK2Q16822 640 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PLAC9Q5JTB6 97 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM244Q5VVB8 128 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 Q6ZRG5 221 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 APCDD1LQ8NCL9 501 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C16orf52Q8NHV5 167 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 METTL21AQ8WXB1 218 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 HOXB13Q92826 284 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 BMFQ96LC9 184 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 JSRP1Q96MG2 331 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C5orf34Q96MH7 638 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 TAF9BQ9HBM6 251 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RCL1Q9Y2P8 373 aaKnown RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 LOC107986453A0A1B0GWG9 222 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C2orf72A6NCS6 295 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 CXorf65A6NEN9 183 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RHPN2P1A8MT19 583 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 MASP2O00187 686 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 YKT6O15498 198 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 SOCS1O15524 211 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RAB6AP20340 208 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 IL11P20809 199 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GLRA1P23415 457 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 LAP3P28838 519 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GNALP38405 381 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 HTR5AP47898 357 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GSK3AP49840 483 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 S100A10P60903 97 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 QRFPP83859 136 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 NAAAQ02083 359 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 FMODQ06828 376 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 EGR3Q06889 387 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PNLIPRP3Q17RR3 467 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ISXQ2M1V0 245 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PDZD11Q5EBL8 140 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 COX15Q7KZN9 410 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 HOGA1Q86XE5 327 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 CATSPERDQ86XM0 798 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF679Q8IYX0 411 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 C15orf54Q8N8G6 183 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 OR13C3Q8NGS6 347 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ERGIC1Q969X5 290 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 ADAT3Q96EY9 351 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 PRRT1Q99946 306 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 RTBDNQ9BSG5 229 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-214ENST00000552783 FBXL21Q9UKT6 434 aa4.32□□□□□ -1.72
LIMA1-214ENST00000552783 GVINP1Q7Z2Y8 2422 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF727A8MUV8 499 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 M0R036 132 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF354AO60765 605 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM127O75204 238 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SRSF10O75494 262 aaKnown RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms