RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MRPL21Q7Z2W9 205 aaKnown RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 OR4F5Q8NH21 305 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 SPRYD4Q8WW59 207 aaPredicted RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 SLCO4A1Q96BD0 722 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 FAM71F1Q96KD3 344 aaPredicted RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 PKP2Q99959 881 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 ADAT1Q9BUB4 502 aaKnown RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 CDADC1Q9BWV3 514 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 OR52D1Q9H346 318 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 OPA3Q9H6K4 179 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 GORASP2Q9H8Y8 452 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 FN3KRPQ9HA64 309 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 BEX1Q9HBH7 125 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 SPAG4Q9NPE6 437 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 RPRD1BQ9NQG5 326 aaKnown RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 DCAF13Q9NV06 445 aaKnown RBP6.33□□□□□ -1.4
NEK3-201ENST00000550331 KIF17Q9P2E2 1029 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 ERVK-18Q9QC07 812 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 RNF7Q9UBF6 113 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 TMCC3Q9ULS5 477 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 POMT1Q9Y6A1 747 aa6.33□□□□□ -1.4
NEK3-201ENST00000550331 TRAV38-1A0A0B4J264 116 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 OR6C68A6NDL8 312 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 CD300LBA8K4G0 201 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 ZNF879B4DU55 563 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 M0R135 149 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 LGALS8O00214 317 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 TNFRSF13BO14836 293 aaPredicted RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 NDUFA2O43678 99 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 GMNNO75496 209 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 TOX4O94842 621 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 GADD45GO95257 159 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 HLA-DQA2P01906 255 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 SEMG1P04279 462 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 CRYBA1P05813 215 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MMP9P14780 707 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 HIST1H1CP16403 213 aaKnown RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 ZNF823P16415 610 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 CA6P23280 308 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 VAMP1P23763 118 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 OTX1P32242 354 aaPredicted RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 CFHR2P36980 270 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 RAG2P55895 527 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PSME3P61289 254 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PDCD1Q15116 288 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MPPED2Q15777 294 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PRAMEF6Q5VXH4 476 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 DRAM2Q6UX65 266 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 LYPD2Q6UXB3 125 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 ZNF620Q6ZNG0 422 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 C17orf107Q6ZR85 190 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 NAA40Q86UY6 237 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 LINC00346Q8IVM7 164 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 FAM86B1Q8N7N1 296 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PNLDC1Q8NA58 520 aaKnown RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 C19orf18Q8NEA5 215 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 SDR9C7Q8NEX9 313 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 OR4K13Q8NH42 304 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 OR52J3Q8NH60 311 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 GATAD2BQ8WXI9 593 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 TAF15Q92804 592 aaKnown RBP eCLIP6.32□□□□□ -1.4
NEK3-201ENST00000550331 SPTSSAQ969W0 71 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 CMTM5Q96DZ9 223 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 ZNF799Q96GE5 643 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PYURFQ96I23 114 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MAP6Q96JE9 813 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 TECTBQ96PL2 329 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 PCGF1Q9BSM1 259 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 IFT27Q9BW83 186 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MMADHCQ9H3L0 296 aaPredicted RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 UFSP2Q9NUQ7 469 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MRPL22Q9NWU5 206 aaKnown RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 C1RLQ9NZP8 487 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 MRPL15Q9P015 296 aaKnown RBP6.32□□□□□ -1.4
NEK3-201ENST00000550331 CTSZQ9UBR2 303 aa6.32□□□□□ -1.4
NEK3-201ENST00000550331 IGHV1-69DA0A0B4J2H0 117 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 CENPVL3A0A0U1RRI6 287 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 CLPSL1A2RUU4 121 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 OOEPA6NGQ2 149 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 OR10H3O60404 316 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 DIRAS1O95057 198 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 ECDO95905 644 aaPredicted RBP6.31□□□□□ -1.4
NEK3-201ENST00000550331 IGHV1-69P01742 117 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 SFTPBP07988 381 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 MELTFP08582 738 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 OMGP23515 440 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 PRDX6P30041 224 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 GSSP48637 474 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 SPIBQ01892 262 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 ZNF92Q03936 586 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 MZT1Q08AG7 82 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 TSPAN31Q12999 210 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 SNAI3Q3KNW1 292 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 METTL11BQ5VVY1 283 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 RUSC1-AS1Q66K80 236 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 OLFML2AQ68BL7 652 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 SFRP4Q6FHJ7 346 aaPredicted RBP6.31□□□□□ -1.4
NEK3-201ENST00000550331 RPL13AP3Q6NVV1 102 aa6.31□□□□□ -1.4
NEK3-201ENST00000550331 FIP1L1Q6UN15 594 aaKnown RBP6.31□□□□□ -1.4
NEK3-201ENST00000550331 SPERTQ8NA61 448 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms