RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ZNF765Q7L2R6 523 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 LILRB2Q8N423 598 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 ADAD2Q8NCV1 583 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 EDAQ92838 391 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 TIMM29Q9BSF4 260 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 CABLES2Q9BTV7 478 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 NUDT9Q9BW91 350 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 FBXL17Q9UF56 701 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 B9D1Q9UPM9 204 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 TDRD15B5MCY1 1934 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 PLXNA1Q9UIW2 1896 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 GLRA1P23415 457 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 RUNX2Q13950 521 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 MLC1Q15049 377 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF77Q15935 545 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 WDR34Q96EX3 536 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 RRNAD1Q96FB5 475 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 FLVCR1Q9Y5Y0 555 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 PDCD11Q14690 1871 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 CEP250Q9BV73 2442 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 CXorf65A6NEN9 183 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 PHF1O43189 567 aaPredicted RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 NUDT21O43809 227 aaKnown RBP12.82□□□□□ -0.36
LIMS1-215ENST00000544547 FASLGP48023 281 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 FAM57BQ71RH2 274 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 UBE3DQ7Z6J8 389 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 LINC01555Q8NAE3 123 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 OR13C8Q8NGS7 320 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 NRSN2Q9GZP1 204 aa12.82□□□□□ -0.36
LIMS1-215ENST00000544547 TNFRSF4P43489 277 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 ROBO4Q8WZ75 1007 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 DDIT4LQ96D03 193 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 SBF1O95248 1867 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 A0A0B4J2E0 115 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 A0A1B0GX12 115 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 GPR37O15354 613 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 CST4P01036 141 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 ST6GAL1P15907 406 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 SLC6A8P48029 635 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 UBE2NP61088 152 aaKnown RBP12.81□□□□□ -0.36
LIMS1-215ENST00000544547 RNF151Q2KHN1 245 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 SFTPA1Q8IWL2 248 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 ZPLD1Q8TCW7 415 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 CHST11Q9NPF2 352 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 MYO16Q9Y6X6 1858 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 DUS4LO95620 317 aaKnown RBP12.81□□□□□ -0.36
LIMS1-215ENST00000544547 CD38P28907 300 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 CXCL12P48061 93 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 MLF1P58340 268 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 FUT5Q11128 374 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 FCRL6Q6DN72 434 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 FAM185AQ8N0U4 392 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 OR2L13Q8N349 312 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 OR51A2Q8NGJ7 313 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 C4orf45Q96LM5 186 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 ZNF2Q9BSG1 426 aaPredicted RBP12.81□□□□□ -0.36
LIMS1-215ENST00000544547 C19orf12Q9NSK7 152 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 NPTNQ9Y639 398 aa12.81□□□□□ -0.36
LIMS1-215ENST00000544547 OR1D4P47884 311 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 SRSF3P84103 164 aaKnown RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 ACKR1Q16570 336 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 LCN15Q6UWW0 184 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 LRP11Q86VZ4 500 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 OR51F2Q8NH61 342 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 HINT2Q9BX68 163 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 GDF2Q9UK05 429 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 SRPK3Q9UPE1 567 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 MSTNO14793 375 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 DFFBO76075 338 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 F10P00742 488 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 OPRM1P35372 400 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 RAB4BP61018 213 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 TLE1Q04724 770 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 NKAIN2Q5VXU1 208 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 EMC6Q9BV81 110 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 SAMD10Q9BYL1 202 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 SLC35B3Q9H1N7 401 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 TIMM8BQ9Y5J9 83 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 SVILO95425 2214 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 CEP350Q5VT06 3117 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 CEBPZOSA8MTT3 80 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 TBX19O60806 448 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 MMP7P09237 267 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 RPL29P47914 159 aaKnown RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 TMEM33P57088 247 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 NKAIN3Q8N8D7 197 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 RHBDD1Q8TEB9 315 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 HIST1H2BAQ96A08 127 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 MRGPRX3Q96LB0 322 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 MAGT1Q9H0U3 335 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 OR10A2Q9H208 303 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 PLEK2Q9NYT0 353 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 VSIG4Q9Y279 399 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 BRCA1P38398 1863 aaKnown RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 LINC01387J3KSC0 135 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 ST8SIA3O43173 380 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 DHRS7BQ6IAN0 325 aaPredicted RBP12.8□□□□□ -0.36
LIMS1-215ENST00000544547 PRSS54Q6PEW0 395 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 PLXDC2Q6UX71 529 aa12.8□□□□□ -0.36
LIMS1-215ENST00000544547 PHOSPHO2Q8TCD6 241 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms