RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 MSANTD3Q96H12 275 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 TIMM17AQ99595 171 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 HINT2Q9BX68 163 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 OR51B5Q9H339 312 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 MYOZ1Q9NP98 299 aaPredicted RBP1.89□□□□□ -2.11
CD44-234ENST00000531873 FAM49BQ9NUQ9 324 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 CES1P1Q9UKY3 287 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 FLVCR2Q9UPI3 526 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 STK38LQ9Y2H1 464 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 KLF12Q9Y4X4 402 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 SRCAPQ6ZRS2 3230 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 ADAMTS13Q76LX8 1427 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 RB1CC1Q8TDY2 1594 aa1.89□□□□□ -2.11
CD44-234ENST00000531873 COL16A1Q07092 1604 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 IGLV1-50A0A075B6I6 118 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 IGKV1-27A0A075B6S5 117 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 A0A0U1RQV1 116 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 LOC100506127A0A0U1RQW1 187 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TMX2-CTNND1H3BSU7 103 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 M0QX08 132 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 DFFAO00273 331 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 POLR1CO15160 346 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 SOCS1O15524 211 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 NEMFO60524 1076 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TRAPPC6AO75865 159 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 CCL2P13500 99 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 PSMC3P17980 439 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 LOXP28300 417 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 CASQ1P31415 396 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 DRD3P35462 400 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 GGT2P36268 569 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 HCCSP53701 268 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 AP1S2P56377 157 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 C1QTNF8P60827 252 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ESRRGP62508 458 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 RPL23P62829 140 aaKnown RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 RAP1AP62834 184 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ARG2P78540 354 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 MECOMQ03112 1051 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 LOXL1Q08397 574 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 SIGLEC14Q08ET2 396 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 OR1Q1Q15612 314 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 DEFB116Q30KQ4 102 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 Q3ZCU0 254 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TFDP3Q5H9I0 405 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TSPO2Q5TGU0 170 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 FBXW9Q5XUX1 488 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 APOBEC3HQ6NTF7 200 aaKnown RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 NDUFAF7Q7L592 441 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 PRSS58Q8IYP2 241 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 SYS1Q8N2H4 156 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ZNF786Q8N393 782 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 SPERTQ8NA61 448 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 OR8K3Q8NH51 312 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ASZ1Q8WWH4 475 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TMEM234Q8WY98 164 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 PTX4Q96A99 478 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 EXOSC8Q96B26 276 aaKnown RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 HAUS1Q96CS2 278 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 NEURL3Q96EH8 262 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 CENPNQ96H22 339 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 RNF170Q96K19 258 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 CAMK2N2Q96S95 79 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 OSBPL11Q9BXB4 747 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 PLA2G2FQ9BZM2 168 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 RAB1BQ9H0U4 201 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 STMN4Q9H169 189 aaPredicted RBP1.88□□□□□ -2.11
CD44-234ENST00000531873 IFI27L2Q9H2X8 130 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ARMC7Q9H6L4 198 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TMEM27Q9HBJ8 222 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 WFDC1Q9HC57 220 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 CSNK1G1Q9HCP0 422 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 CTSFQ9UBX1 484 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ZNF229Q9UJW7 825 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ZNF222Q9UK12 451 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 TBX21Q9UL17 535 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 ADGRL1O94910 1474 aa1.88□□□□□ -2.11
CD44-234ENST00000531873 SBNO1A3KN83 1393 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 A0A0A6YYD5 115 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 IGHV1OR15-9A0A0B4J2B8 117 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 ZNF879B4DU55 563 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 KRBOX1C9JBD0 128 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 LINC01619G3V211 115 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 K7EN84 100 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 PRMT5O14744 637 aaPredicted RBP1.87□□□□□ -2.11
CD44-234ENST00000531873 ZNF207O43670 478 aaKnown RBP1.87□□□□□ -2.11
CD44-234ENST00000531873 RAD1O60671 282 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 SEMA3DO95025 777 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 SLC25A14O95258 325 aaPredicted RBP1.87□□□□□ -2.11
CD44-234ENST00000531873 HTR2CP28335 458 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 GNRHRP30968 328 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 POLR2IP36954 125 aaKnown RBP1.87□□□□□ -2.11
CD44-234ENST00000531873 NOVP48745 357 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 TAS2R46P59540 309 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 SLC35B1P78383 322 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 CDK5Q00535 292 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 RPL18AQ02543 176 aaKnown RBP1.87□□□□□ -2.11
CD44-234ENST00000531873 STK11Q15831 433 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 ATP6V1FQ16864 119 aa1.87□□□□□ -2.11
CD44-234ENST00000531873 C18orf21Q32NC0 220 aaPredicted RBP1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms