RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZNF823P16415 610 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 ATP6V1B2P21281 511 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 PYCR1P32322 319 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 RPS27P42677 84 aaKnown RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 RAG2P55895 527 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 RELBQ01201 579 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 PDLIM3Q53GG5 364 aaPredicted RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 GLYATL3Q5SZD4 288 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 SLC35F1Q5T1Q4 408 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 RUSC1-AS1Q66K80 236 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 SFRP4Q6FHJ7 346 aaPredicted RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 PGBD2Q6P3X8 592 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 FIP1L1Q6UN15 594 aaKnown RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 DRAM2Q6UX65 266 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 DHFR2Q86XF0 187 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 OR52L1Q8NGH7 329 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 OR4F5Q8NH21 305 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 OR2AE1Q8NHA4 323 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 GNPDA2Q8TDQ7 276 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 CCDC124Q96CT7 223 aaKnown RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 FAM71F1Q96KD3 344 aaPredicted RBP9.41□□□□□ -0.9
VPS28-214ENST00000531032 TBX15Q96SF7 602 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 CHIAQ9BZP6 476 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 TRIM15Q9C019 465 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 MARCH7Q9H992 704 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 BEX1Q9HBH7 125 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 SMURF1Q9HCE7 757 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 IL1RAPQ9NPH3 570 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 C1RLQ9NZP8 487 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 ACTR3BQ9P1U1 418 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 KIF17Q9P2E2 1029 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 POMT1Q9Y6A1 747 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 CDH10Q9Y6N8 788 aa9.41□□□□□ -0.9
VPS28-214ENST00000531032 TRAV38-1A0A0B4J264 116 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 CENPVL3A0A0U1RRI6 287 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 C5orf63A6NC05 138 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 OOEPA6NGQ2 149 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 GGT3PA6NGU5 568 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 C3orf80F5H4A9 247 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 TNFRSF11BO00300 401 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 BHLHE40O14503 412 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 ADAM20O43506 726 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 FCN3O75636 299 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 CRYBA1P05813 215 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 RPL15P61313 204 aaKnown RBP9.4□□□□□ -0.9
VPS28-214ENST00000531032 DEFA6Q01524 100 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 OR8B8Q15620 311 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 PCK2Q16822 640 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 C11orf91Q3C1V1 193 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 FAM98BQ52LJ0 330 aaKnown RBP9.4□□□□□ -0.9
VPS28-214ENST00000531032 RPL13AP3Q6NVV1 102 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 FAM90A1Q86YD7 464 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 GCSAMQ8N6F7 178 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 PNLDC1Q8NA58 520 aaKnown RBP9.4□□□□□ -0.9
VPS28-214ENST00000531032 SPERTQ8NA61 448 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 CYB561A3Q8NBI2 242 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 PROKR2Q8NFJ6 384 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 OR4C15Q8NGM1 316 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 OR2T4Q8NH00 348 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 ZNRF4Q8WWF5 429 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 GATAD2BQ8WXI9 593 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 WDFY2Q96P53 400 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 SIRPDQ9H106 197 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 OPA3Q9H6K4 179 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 EGLN3Q9H6Z9 239 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 C1orf123Q9NWV4 160 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 PRPF19Q9UMS4 504 aaKnown RBP9.4□□□□□ -0.9
VPS28-214ENST00000531032 COMMD3-BMI1R4GMX3 469 aa9.4□□□□□ -0.9
VPS28-214ENST00000531032 VWFP04275 2813 aa9.4□□□□□ -0.91
VPS28-214ENST00000531032 TVP23AA6NH52 213 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 KRT36O76013 467 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 CCNB2O95067 398 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 LHBP01229 141 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 HMGA2P52926 109 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 SRSF4Q08170 494 aaKnown RBP9.39□□□□□ -0.91
VPS28-214ENST00000531032 MZT1Q08AG7 82 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 PDCD1Q15116 288 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 METTL11BQ5VVY1 283 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 TEX36Q5VZQ5 186 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 OLFML2AQ68BL7 652 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 LCN8Q6JVE9 175 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 LYPD4Q6UWN0 246 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 C17orf107Q6ZR85 190 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 ZNF826PQ6ZT77 177 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 DCXRQ7Z4W1 244 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 LINC00471Q8N535 108 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 KIR3DL3Q8N743 410 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 BOLLQ8N9W6 283 aaKnown RBP9.39□□□□□ -0.91
VPS28-214ENST00000531032 SLC37A3Q8NCC5 494 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 OR9Q2Q8NGE9 314 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 OR56B2PQ8NGI1 322 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 SSMEM1Q8WWF3 244 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 SPSB4Q96A44 273 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 CITED1Q99966 193 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 BTBD10Q9BSF8 475 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 COPS4Q9BT78 406 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 MAGIXQ9H6Y5 334 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 REEP1Q9H902 201 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 TNFRSF19Q9NS68 423 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 ACOXLQ9NUZ1 547 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms