RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ASAH2BP0C7U1 165 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 RNF224P0DH78 156 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 RASGEF1BQ0VAM2 473 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 FAM24BQ8N5W8 94 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 LRRC75AQ8NAA5 344 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 OR4D6Q8NGJ1 314 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 ASB5Q8WWX0 329 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 KIRREL1Q96J84 757 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 OR11A1Q9GZK7 315 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 SLC17A5Q9NRA2 495 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 TMEM14AQ9Y6G1 99 aa12.66□□□□□ -0.38
USP48-213ENST00000529637 BLACEA4D250 179 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 PPIHO43447 177 aaKnown RBP12.65□□□□□ -0.38
USP48-213ENST00000529637 PMP2P02689 132 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 CFPP27918 469 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 GPX4P36969 197 aaPredicted RBP12.65□□□□□ -0.38
USP48-213ENST00000529637 EBPQ15125 230 aaKnown RBP12.65□□□□□ -0.38
USP48-213ENST00000529637 SLC9A3R2Q15599 337 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 ISXQ2M1V0 245 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 AWAT1Q58HT5 328 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 PRRT1Q99946 306 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 GGACTQ9BVM4 153 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 NUDT9Q9BW91 350 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 C2orf72A6NCS6 295 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 TLCD2A6NGC4 264 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 NUDT19A8MXV4 375 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 DUS4LO95620 317 aaKnown RBP12.65□□□□□ -0.38
USP48-213ENST00000529637 CD38P28907 300 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 LTBRP36941 435 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 PNLIPRP3Q17RR3 467 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 RNF212Q495C1 297 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 FOXRED2Q8IWF2 684 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 CHST4Q8NCG5 386 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 OR2I1PQ8NGU4 316 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 DHDHQ9UQ10 334 aa12.65□□□□□ -0.38
USP48-213ENST00000529637 C7orf77A4D0Y5 90 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 MYF5P13349 255 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 ACKR1Q16570 336 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 TMEM244Q5VVB8 128 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 SLC25A44Q96H78 314 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 PFDN5Q99471 154 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 COPS7AQ9UBW8 275 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 TIMM10BQ9Y5J6 103 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 MED12Q93074 2177 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 THADAQ6YHU6 1953 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 YIF1AO95070 293 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 WISP1O95388 367 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 MT-ND4LP03901 98 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 CLPSP04118 112 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 SELLP14151 372 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 IGFBP4P22692 258 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 EIF2S3P41091 472 aaKnown RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 ARRB1P49407 418 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 CLINT1Q14677 625 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 MAMDC2Q7Z304 686 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 ADGRE4PQ86SQ3 457 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 WDSUB1Q8N9V3 476 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 ZDHHC12Q96GR4 267 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 GUSBP08236 651 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 GNB3P16520 340 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 FASLGP48023 281 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 OR1D5P58170 312 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 C16orf47Q6ZP98 133 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 SLC25A43Q8WUT9 341 aaPredicted RBP12.64□□□□□ -0.39
USP48-213ENST00000529637 OR10C1Q96KK4 312 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 RHOVQ96L33 236 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 PCNX3Q9H6A9 2034 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 LANCL2Q9NS86 450 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 SLC2A8Q9NY64 477 aa12.64□□□□□ -0.39
USP48-213ENST00000529637 IGHV3-20A0A0C4DH32 117 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 H0YIG0 161 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 RAB27BO00194 218 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 LDLRAD4O15165 306 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 NME1P15531 152 aaKnown RBP12.63□□□□□ -0.39
USP48-213ENST00000529637 PGCP20142 388 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 RAB5AP20339 215 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 LAP3P28838 519 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 EGR3Q06889 387 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 TDGQ13569 410 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 SLC17A1Q14916 467 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 EEF1A1P5Q5VTE0 462 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 FNDC7Q5VTL7 733 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 BTNL8Q6UX41 500 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 OTOSQ8NHW6 89 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 AQP3Q92482 292 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 SLCO5A1Q9H2Y9 848 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 RTTNQ86VV8 2226 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 TRAV36DV7A0A075B6V5 113 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 MFNGO00587 321 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 EIF1AYO14602 144 aaKnown RBP12.63□□□□□ -0.39
USP48-213ENST00000529637 EIF1AXP47813 144 aaKnown RBP12.63□□□□□ -0.39
USP48-213ENST00000529637 SLC6A8P48029 635 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 RAB32Q13637 225 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 MEF2DQ14814 521 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 ZNF260Q3ZCT1 412 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 SLC5A7Q9GZV3 580 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 ASH2LQ9UBL3 628 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 AMDHD2Q9Y303 409 aa12.63□□□□□ -0.39
USP48-213ENST00000529637 ZNF729A6NN14 1252 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms