RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RAD1O60671 282 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 GCM2O75603 506 aaPredicted RBP4.7□□□□□ -1.66
NUP54-215ENST00000514313 HTR2CP28335 458 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 KRTAP10-3P60369 221 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 KRTAP10-7P60409 375 aaPredicted RBP4.7□□□□□ -1.66
NUP54-215ENST00000514313 ESRRGP62508 458 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 MECOMQ03112 1051 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 SYCNQ0VAF6 134 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 FBXW9Q5XUX1 488 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 SLC30A8Q8IWU4 369 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 SPERTQ8NA61 448 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 OR6K6Q8NGW6 343 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 NDNFQ8TB73 568 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 LRRC20Q8TCA0 184 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 HSD17B10Q99714 261 aaKnown RBP4.7□□□□□ -1.66
NUP54-215ENST00000514313 OSBPL11Q9BXB4 747 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 SLC17A9Q9BYT1 436 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 GGA2Q9UJY4 613 aa4.7□□□□□ -1.66
NUP54-215ENST00000514313 SBNO1A3KN83 1393 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 SPAG7O75391 227 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 RHOXF2BP0C7M4 288 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 IGFBP3P17936 291 aaPredicted RBP4.69□□□□□ -1.66
NUP54-215ENST00000514313 PGAM1P18669 254 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 CCNOP22674 350 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 KIR3DL2P43630 455 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 RPS9P46781 194 aaKnown RBP4.69□□□□□ -1.66
NUP54-215ENST00000514313 HCCSP53701 268 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 GFERP55789 205 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 CDK5Q00535 292 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 CYP24A1Q07973 514 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 OR1Q1Q15612 314 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 SMUG1Q53HV7 270 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 FAM78AQ5JUQ0 283 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 SNX20Q7Z614 316 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 CDKL3Q8IVW4 592 aaPredicted RBP4.69□□□□□ -1.66
NUP54-215ENST00000514313 RIMKLAQ8IXN7 391 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 PGAM4Q8N0Y7 254 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 CYB561D1Q8N8Q1 229 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 RHOXF2Q9BQY4 288 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 PRRG3Q9BZD7 231 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 WFDC1Q9HC57 220 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 STMN3Q9NZ72 180 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 HYOU1Q9Y4L1 999 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 KLF12Q9Y4X4 402 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 V9GYY9 64 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 ADAMTS13Q76LX8 1427 aa4.69□□□□□ -1.66
NUP54-215ENST00000514313 IGLV4-69A0A075B6H9 119 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TRAV19A0A0A6YYK7 116 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 A0A0U1RQV1 116 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 ZNF879B4DU55 563 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 REM1O75628 298 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TRAPPC6AO75865 159 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 PTTG1O95997 202 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 PAHP00439 452 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 HTR1DP28221 377 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 ARL2P36404 184 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TALDO1P37837 337 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 GPR4P46093 362 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 RPL18AQ02543 176 aaKnown RBP4.68□□□□□ -1.66
NUP54-215ENST00000514313 CPTPQ5TA50 214 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TMPRSS11AQ6ZMR5 421 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 RTL4Q6ZR62 310 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 NTM-AS1Q6ZSK4 140 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 SH2D6Q7Z4S9 175 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 DAW1Q8N136 415 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 C19orf18Q8NEA5 215 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 OR6N1Q8NGY5 312 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 OR10G6Q8NH81 332 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 COQ8AQ8NI60 647 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TMEM234Q8WY98 164 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 FAM19A4Q96LR4 140 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 GLT1D1Q96MS3 346 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TEAD3Q99594 435 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 GABRG3Q99928 467 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 TMEM243Q9BU79 118 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 OR52D1Q9H346 318 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 HMG20AQ9NP66 347 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 ZNF229Q9UJW7 825 aa4.68□□□□□ -1.66
NUP54-215ENST00000514313 AQRO60306 1485 aaKnown RBP eCLIP4.68□□□□□ -1.66
NUP54-215ENST00000514313 IGHV1OR15-9A0A0B4J2B8 117 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 PRMT5O14744 637 aaPredicted RBP4.67□□□□□ -1.66
NUP54-215ENST00000514313 RRP8O43159 456 aaKnown RBP4.67□□□□□ -1.66
NUP54-215ENST00000514313 SLC22A5O76082 557 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 VAPBO95292 243 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 LCN1P31025 176 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 DEKP35659 375 aaKnown RBP4.67□□□□□ -1.66
NUP54-215ENST00000514313 PPOXP50336 477 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 MNAT1P51948 309 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 LOXL1Q08397 574 aaPredicted RBP4.67□□□□□ -1.66
NUP54-215ENST00000514313 STK11Q15831 433 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 DUPD1Q68J44 220 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.67□□□□□ -1.66
NUP54-215ENST00000514313 ZFP2Q6ZN57 461 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 CALHM1Q8IU99 346 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 WDFY1Q8IWB7 410 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 SLC34A3Q8N130 599 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 UBAC2Q8NBM4 344 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 OR10G2Q8NGC3 310 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 OR52P1PQ8NH57 321 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 RXFP2Q8WXD0 754 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms