RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LILRA5A6NI73 299 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 AGPAT2O15120 278 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 HCKP08631 526 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 HOXB5P09067 269 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 GIMD1P0DJR0 217 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 OR3A4PP47883 348 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 QRFPP83859 136 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 FOXF1Q12946 379 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 AKIRIN2Q53H80 203 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 CCDC157Q569K6 752 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 TMPRSS9Q7Z410 1059 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 GALNTL5Q7Z4T8 443 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 OR10Z1Q8NGY1 313 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 PTX4Q96A99 478 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 RAB3CQ96E17 227 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 METTL8Q9H825 291 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 OR5AC2Q9NZP5 309 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF319Q9P2F9 582 aa8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF107Q9UII5 783 aaPredicted RBP8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 MRPS28Q9Y2Q9 187 aaKnown RBP8.21□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF705EA8MWA4 302 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 TPT1P13693 172 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 PVALBP20472 110 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 CD38P28907 300 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 DAP3P51398 398 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 OIT3Q8WWZ8 545 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 TO15178 435 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM50BP56557 158 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 RNF4P78317 190 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 HSD11B2P80365 405 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 CFHR1Q03591 330 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 SVBPQ8N300 66 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 OR51F2Q8NH61 342 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 C5orf66Q9H5L9 145 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 SERINC1Q9NRX5 453 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 PRELID3BQ9Y3B1 194 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 A0A1W2PNR3 127 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 RER1O15258 196 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 CRTAPO75718 401 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 RAD51DO75771 328 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 FARS2O95363 451 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 NME1P15531 152 aaKnown RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 DHPSP49366 369 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 RSPO4Q2I0M5 234 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 DEGS2Q6QHC5 323 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 ARHGAP5-AS1Q96IT6 56 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 SLC7A5P2Q9GIP4 190 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 ACKR4Q9NPB9 350 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 CHST11Q9NPF2 352 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 GPR84Q9NQS5 396 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 GPR27Q9NS67 375 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 ASH2LQ9UBL3 628 aa8.21□□□□□ -1.1
LIMCH1-215ENST00000512632 BPNT1O95861 308 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 FLI1Q01543 452 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 CLEC18BQ6UXF7 455 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 HOGA1Q86XE5 327 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 OR4A4PQ8NGN8 299 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 ARL11Q969Q4 196 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM230Q96A57 120 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 C8orf33Q9H7E9 229 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 WBP1LQ9NX94 342 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 CYB5R1Q9UHQ9 305 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 SHISA7A6NL88 538 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 METTL12A8MUP2 240 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM14DPA8MWL7 114 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 ADAM10O14672 748 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 NDUFA2O43678 99 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 EFNA2O43921 213 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 KNG1P01042 644 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 IGHMP01871 453 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 GLRA1P23415 457 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 OR3A2P47893 321 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 S100A10P60903 97 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 DTWD2Q8NBA8 298 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 CFAP54Q96N23 3096 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 H3BMH7 237 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 SFTPBP07988 381 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 NFYBP25208 207 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 NPBWR1P48145 328 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 STK11Q15831 433 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 PCK2Q16822 640 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM128Q5BJH2 165 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 MFSD8Q8NHS3 518 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 RNF141Q8WVD5 230 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 OR10C1Q96KK4 312 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 CNTNAP3BQ96NU0 1288 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM59Q9BXS4 323 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 ELL3Q9HB65 397 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 CYTL1Q9NRR1 136 aa8.2□□□□□ -1.1
LIMCH1-215ENST00000512632 TEX13DA0A0J9YY54 714 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 RAB19A4D1S5 217 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 C5orf63A6NC05 138 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 VSTM2BA6NLU5 285 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 SERPINA5P05154 406 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 AMY2BP19961 511 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 RAB32Q13637 225 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 ANKRD55Q3KP44 614 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 NAA40Q86UY6 237 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 OR5AS1Q8N127 324 aa8.19□□□□□ -1.1
LIMCH1-215ENST00000512632 ZFP82Q8N141 532 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms