RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 RAI1Q7Z5J4 1906 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 C5orf63A6NC05 138 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ACOD1A6NK06 481 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 B9A039 149 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 H7C1Q1 480 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MYL12BO14950 172 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 XRCC2O43543 280 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 CDK1P06493 297 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 SOD3P08294 240 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ADRA2AP08913 450 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 DANCRP0C864 163 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 LIMS3P0CW19 117 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 LIMS4P0CW20 117 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ZNF250P15622 560 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ANOS1P23352 680 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 CRHBPP24387 322 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 C21orf33P30042 268 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 MPV17P39210 176 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 PSMB10P40306 273 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MMP16P51512 607 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 SNRPD2P62316 118 aaKnown RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 SLC35A2P78381 396 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MVKQ03426 396 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 HLXQ14774 488 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 EFNB3Q15768 340 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 GFOD2Q3B7J2 385 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 BCL2L15Q5TBC7 163 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MBNL2Q5VZF2 373 aaKnown RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 PGAP1Q75T13 922 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 PRSS45Q7RTY3 260 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MRPL21Q7Z2W9 205 aaKnown RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 DTX2Q86UW9 622 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 LRP11Q86VZ4 500 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 SYS1Q8N2H4 156 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 OR2AE1Q8NHA4 323 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 KLF14Q8TD94 323 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 CMBLQ96DG6 245 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 SIGLEC11Q96RL6 698 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 CCL19Q99731 98 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ZNF649Q9BS31 505 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 TRAF4Q9BUZ4 470 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 PBOV1Q9GZY1 135 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 OPA3Q9H6K4 179 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 ISG20L2Q9H9L3 353 aaKnown RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 BEX4Q9NWD9 120 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 PAK1IP1Q9NWT1 392 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 ERVK-18Q9QC07 812 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 CLEC2DQ9UHP7 191 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 OR52A1Q9UKL2 312 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 LAMP3Q9UQV4 416 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 CAB39Q9Y376 341 aaPredicted RBP8.59□□□□□ -1.03
NUP54-203ENST00000504173 LRRC42Q9Y546 428 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 SNX5Q9Y5X3 404 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 MGAM2Q2M2H8 2515 aa8.59□□□□□ -1.03
NUP54-203ENST00000504173 IGLV3-9A0A075B6K5 115 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 RGS10O43665 173 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 TIMM8AO60220 97 aaPredicted RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 SRSF10O75494 262 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 CLPTM1O96005 669 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 PNPP00491 289 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 MT-ND5P03915 603 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 HTR1AP08908 422 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 BMP4P12644 408 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 RAC2P15153 192 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 SELEP16581 610 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 CFL1P23528 166 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 EEF1B2P24534 225 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 EVX1P49640 407 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 GBX2P52951 348 aaPredicted RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 ZNF92Q03936 586 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 PSG7Q13046 419 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 MRPL28Q13084 256 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 GK2Q14410 553 aaPredicted RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 MOGQ16653 247 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 NKPD1Q17RQ9 610 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 ALKBH6Q3KRA9 238 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 OR2G6Q5TZ20 316 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 FBXW12Q6X9E4 464 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 COMMD2Q86X83 199 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 EGFL6Q8IUX8 553 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 OR52N1Q8NH53 320 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 SPRYD4Q8WW59 207 aaPredicted RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 SGCDQ92629 289 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 RORBQ92753 470 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 PELI1Q96FA3 418 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 REEP6Q96HR9 211 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 CCDC90BQ9GZT6 254 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 RGCCQ9H4X1 137 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 DUSP21Q9H596 190 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 DYNLRB1Q9NP97 96 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 TAAR3PQ9P1P4 343 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 ZNF319Q9P2F9 582 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 MYEF2Q9P2K5 600 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 NUFIP1Q9UHK0 495 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 GPR160Q9UJ42 338 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 PURGQ9UJV8 347 aaKnown RBP8.58□□□□□ -1.04
NUP54-203ENST00000504173 ERGIC3Q9Y282 383 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 DSCAMO60469 2012 aa8.58□□□□□ -1.04
NUP54-203ENST00000504173 A0A0U1RQV5 110 aa8.57□□□□□ -1.04
NUP54-203ENST00000504173 TMEM129A0AVI4 362 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms