RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 FAM90A27PA6NNH2 459 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 OR10J4P0C629 311 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 ABCD3P28288 659 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 CA5BP1Q8WTZ4 195 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 AQP7O14520 342 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 WDR1O75083 606 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 SNTB1Q13884 538 aaKnown RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 CTF1Q16619 201 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 Q6ZRG5 221 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 PRSS45Q7RTY3 260 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 CDC20BQ86Y33 519 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 LFNGQ8NES3 379 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 OR2AK2Q8NG84 335 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 OR4D9Q8NGE8 314 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 BSCL2Q96G97 398 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-215ENST00000496447 TOLLIPQ9H0E2 274 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 LRP5O75197 1615 aa11.87□□□□□ -0.51
PTPRF-215ENST00000496447 TXNDC12O95881 172 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 GABRB1P18505 474 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 RPS16P62249 146 aaKnown RBP11.86□□□□□ -0.51
PTPRF-215ENST00000496447 OR2B11Q5JQS5 317 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 FAM74A1Q5RGS3 127 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SPATA46Q5T0L3 261 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF321PQ8N8H1 164 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 OR51S1Q8NGJ8 323 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 FOXB1Q99853 325 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 PURGQ9UJV8 347 aaKnown RBP11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ALOX5APP20292 161 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SMIM21Q3B7S5 101 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SIGLEC11Q96RL6 698 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF2Q9BSG1 426 aaPredicted RBP11.86□□□□□ -0.51
PTPRF-215ENST00000496447 CHST2Q9Y4C5 530 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SCN9AQ15858 1988 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 PRSS36Q5K4E3 855 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 CLEC9AQ6UXN8 241 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ANKRD37Q7Z713 158 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SPNS2Q8IVW8 549 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 HSD17B11Q8NBQ5 300 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 LHFPL5Q8TAF8 219 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ASB13Q8WXK3 278 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SEC22CQ9BRL7 303 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 A0A087WUJ7 227 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SHISA8B8ZZ34 492 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SPRY3O43610 288 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 TAGLN2P37802 199 aaKnown RBP11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SLC17A1Q14916 467 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ACER2Q5QJU3 275 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 TMEM215Q68D42 235 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 GABRG3Q99928 467 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 PLK3Q9H4B4 646 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 GAR1Q9NY12 217 aaKnown RBP11.86□□□□□ -0.51
PTPRF-215ENST00000496447 LOXHD1Q8IVV2 1947 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 ZAR1LA6NP61 321 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 HSPB2A8KAH6 182 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 AGERQ15109 404 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 HSPB2Q16082 182 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 OTPQ5XKR4 325 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 VASH2Q86V25 355 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 CORO2AQ92828 525 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 CDCA4Q9BXL8 241 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 GABARAPL3Q9BY60 117 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 SRRQ9GZT4 340 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 FN3KRPQ9HA64 309 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 MYO7AQ13402 2215 aa11.86□□□□□ -0.51
PTPRF-215ENST00000496447 PAPPAQ13219 1627 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TMEM200CA6NKL6 621 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 GALR2O43603 387 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF121P58317 390 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 SIGLEC14Q08ET2 396 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TESK1Q15569 626 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 GSG1Q2KHT4 349 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 SLC25A26Q70HW3 274 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 BTLAQ7Z6A9 289 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 SYS1Q8N2H4 156 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 OR10G3Q8NGC4 313 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF251Q9BRH9 671 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 FSCN3Q9NQT6 498 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 PRDM7Q9NQW5 492 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 ZNF71Q9NQZ8 489 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 OR2C1O95371 312 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 HOXC4P09017 264 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 MGST1P10620 155 aaKnown RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TNFRSF1AP19438 455 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 ANKRD34AQ69YU3 496 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 CMTM4Q8IZR5 234 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 UBAC2Q8NBM4 344 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 APOBEC3DQ96AK3 386 aaPredicted RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TXN2Q99757 166 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 SLC25A19Q9HC21 320 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 EXOSC3Q9NQT5 275 aaKnown RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 LTBP4Q8N2S1 1624 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 RD3LP0DJH9 198 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 CDAP32320 146 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 UBE2IP63279 158 aaKnown RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 RNPS1Q15287 305 aaKnown RBP11.85□□□□□ -0.51
PTPRF-215ENST00000496447 CCDC190Q86UF4 302 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 OR6S1Q8NH40 331 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TMPRSS5Q9H3S3 457 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 TNFRSF12AQ9NP84 129 aa11.85□□□□□ -0.51
PTPRF-215ENST00000496447 NDUFB11Q9NX14 153 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms