RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, human

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-A-208	ENST00000496081	CNEP1R1	Q8N9A8	125 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR52N4	Q8NGI2	321 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR6M1	Q8NGM8	313 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	RAB40A	Q8WXH6	277 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	FOXRED1	Q96CU9	486 aa	Predicted RBP	14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	SP140L	Q9H930	580 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZNF71	Q9NQZ8	489 aa	Predicted RBP	14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	RHBDL2	Q9NX52	303 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	B3GNT2	Q9NY97	397 aa		14.26	□□□□□ -0.13
HLA-A-208	ENST00000496081	CHD8	Q9HCK8	2581 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	LOC100509620	A0A075B734	347 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	SULT1B1	O43704	296 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	ARR3	P36575	388 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	UCN	P55089	124 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	FOXF2	Q12947	444 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	KRTCAP3	Q53RY4	240 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZNF324B	Q6AW86	544 aa	Predicted RBP	14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	BAIAP2L2	Q6UXY1	529 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	SEM1	Q6ZVN7	128 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	GDPD3	Q7L5L3	318 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	IZUMO1	Q8IYV9	350 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR5AS1	Q8N127	324 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR2AE1	Q8NHA4	323 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	HAVCR1	Q96D42	359 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	S100A16	Q96FQ6	103 aa	Known RBP	14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	KCNK15	Q9H427	330 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	MRPS7	Q9Y2R9	242 aa	Known RBP	14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	ATM	Q13315	3056 aa		14.25	□□□□□ -0.13
HLA-A-208	ENST00000496081	LOC100289279	A0A1B0GTE1	492 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	LINC00854	A0A1B0GVQ3	168 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	MTRF1	O75570	445 aa	Known RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	COX5B	P10606	129 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	IGHV1-2	P23083	117 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	TRIQK	Q629K1	86 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	VWA1	Q6PCB0	445 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081		Q8NA96	180 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	CCDC54	Q8NEL0	328 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR4D6	Q8NGJ1	314 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	OR6K3	Q8NGY3	331 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	REEP6	Q96HR9	211 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	SORCS2	Q96PQ0	1159 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	C1QTNF5	Q9BXJ0	243 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	CNTD2	Q9H8S5	307 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	MBD3L4	A6NDZ8	208 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	MBD3L3	A6NE82	208 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	MBD3L5	A6NJ08	208 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	TPO	P07202	933 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	ERCC1	P07992	297 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	TMIGD3	P0DMS9	266 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	SPN	P16150	400 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	FAH	P16930	419 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	EFNB2	P52799	333 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	PITPNA	Q00169	270 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	ASAH1	Q13510	395 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	SF3B4	Q15427	424 aa	Known RBP eCLIP	14.24	□□□□□ -0.13	8e-7	■■■□□ 18.2
HLA-A-208	ENST00000496081	TBRG1	Q3YBR2	411 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	RTL6	Q6ICC9	239 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	TMEM53	Q6P2H8	277 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	COLCA1	Q6ZS62	124 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081		Q6ZT83	130 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZFP3	Q96NJ6	502 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	THAP7	Q9BT49	309 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	METTL17	Q9H7H0	456 aa	Predicted RBP	14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	FAIM	Q9NVQ4	179 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	PIGL	Q9Y2B2	252 aa		14.24	□□□□□ -0.13
HLA-A-208	ENST00000496081	IGKV1-9	A0A0C4DH69	117 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	TMEM272	A0A1B0GTI8	110 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	PLA2G10	O15496	165 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	LANCL1	O43813	399 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	SSX4	O60224	188 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	TNFSF13	O75888	250 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	CNOT4	O95628	575 aa	Known RBP	14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	CCL2	P13500	99 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	GABRA1	P14867	456 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	ARSB	P15848	533 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	CDK2	P24941	298 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	STOM	P27105	288 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	THBS4	P35443	961 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	MMP15	P51511	669 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	CXADR	P78310	365 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	RNF144B	Q7Z419	303 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	DPPA2	Q7Z7J5	298 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZNF584	Q8IVC4	421 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	C19orf18	Q8NEA5	215 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	SNRNP27	Q8WVK2	155 aa	Known RBP	14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	C10orf35	Q96D05	121 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	UQCC2	Q9BRT2	126 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZNF391	Q9UJN7	358 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	FAM215A	Q9Y5M1	114 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	PIEZO2	Q9H5I5	2752 aa		14.23	□□□□□ -0.13
HLA-A-208	ENST00000496081	C5orf49	A4QMS7	147 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	EEF1E1	O43324	174 aa	Known RBP	14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	WDR1	O75083	606 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	TOX	O94900	526 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	FAM87A	P0C7U9	286 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	EDN3	P14138	238 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	ACKR3	P25106	362 aa		14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	ZNF93	P35789	620 aa	Predicted RBP	14.22	□□□□□ -0.13
HLA-A-208	ENST00000496081	PTH2R	P49190	550 aa		14.22	□□□□□ -0.13

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