RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CLEC9AQ6UXN8 241 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 OR10R2Q8NGX6 335 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 NUBPLQ8TB37 319 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 CCDC107Q8WV48 283 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 MRGPRFQ96AM1 343 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 RABL2AQ9UBK7 228 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 RABL2BQ9UNT1 228 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 WIF1Q9Y5W5 379 aa14.65□□□□□ -0.06
CCDC88B-210ENST00000494566 A0A1B0GTQ1 180 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 HSPB2A8KAH6 182 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF735P0CB33 412 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 RPA2P15927 270 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 ABOP16442 354 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 IKZF1Q13422 519 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 HSPB2Q16082 182 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 PPP1R3BQ86XI6 285 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 OR5M8Q8NGP6 311 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 RASL10BQ96S79 203 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 UTP23Q9BRU9 249 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 TREM1Q9NP99 234 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 KLHL13Q9P2N7 655 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 STK17BO94768 372 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 TTRP02766 147 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 CNR1P21554 472 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 NFYBP25208 207 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 ID4P47928 161 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF385CQ66K41 422 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 MAFAQ8NHW3 353 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 SAP25Q8TEE9 199 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 HRH4Q9H3N8 390 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 RASL12Q9NYN1 266 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 CSAG2Q9Y5P2 127 aa14.64□□□□□ -0.07
CCDC88B-210ENST00000494566 GLI4P10075 376 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 SERPINF1P36955 418 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 CLRN1P58418 232 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM176BQ3YBM2 270 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 PDSS1Q5T2R2 415 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 DNM1P34Q6PK57 102 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 PUSL1Q8N0Z8 303 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 OR51E1Q8TCB6 317 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 DEFB126Q9BYW3 111 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 GPN3Q9UHW5 284 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 IGHV3-15A0A0B4J1V0 119 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 MED19A0JLT2 244 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 ABCD4O14678 606 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 ZFAND5O76080 213 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 IFNA6P05013 189 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 MGMTP16455 207 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 CASRP41180 1078 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 PPIAP62937 165 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 ZP4Q12836 540 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 SNTB1Q13884 538 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 ADGRE4PQ86SQ3 457 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 THAP6Q8TBB0 222 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 FAM71F1Q96KD3 344 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 FAM206AQ9NX38 181 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 UPB1Q9UBR1 384 aa14.63□□□□□ -0.07
CCDC88B-210ENST00000494566 A0A1B0GV50 99 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 MPIG6BO95866 241 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 IL32P24001 234 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ETV3LQ6ZN32 361 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 HSD17B13Q7Z5P4 300 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 NAXDQ8IW45 347 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 INO80EQ8NBZ0 244 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 RNF133Q8WVZ7 376 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 CLDN23Q96B33 292 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM41AQ96HV5 264 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 GAREM1Q9H706 876 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF275Q9NSD4 429 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ALKBH4Q9NXW9 302 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ASH2LQ9UBL3 628 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 MSGN1A6NI15 193 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 F8W036 122 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 RER1O15258 196 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 SYT7O43581 403 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ACTL6AO96019 429 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 BLOC1S1P78537 153 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 UNC119Q13432 240 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 AWAT2Q6E213 333 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 UEVLDQ8IX04 471 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 WDSUB1Q8N9V3 476 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM104Q8NE00 496 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 PBOV1Q9GZY1 135 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 FN3KRPQ9HA64 309 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 MLXQ9UH92 298 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 GDF2Q9UK05 429 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 TNFSF18Q9UNG2 199 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 KCNK7Q9Y2U2 307 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 LHFPL6Q9Y693 200 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF208O43345 1280 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 ADCYAP1P18509 176 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 C5orf46Q6UWT4 87 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 OR5L2Q8NGL0 311 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 C15orf40Q8WUR7 153 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 SLC39A7Q92504 469 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 RRNAD1Q96FB5 475 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 JSRP1Q96MG2 331 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 SLC6A15Q9H2J7 730 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 SDHAF3Q9NRP4 125 aa14.62□□□□□ -0.07
CCDC88B-210ENST00000494566 CYB5R1Q9UHQ9 305 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms