RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PRKYO43930 277 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 MTRF1O75570 445 aaKnown RBP6.87□□□□□ -1.31
USP40-216ENST00000485943 TACSTD2P09758 323 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ACSM4P0C7M7 580 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ANPEPP15144 967 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 PCMT1P22061 227 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 MPV17P39210 176 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 MAGEB1P43366 347 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 GZMKP49863 264 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 CXCR4P61073 352 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ACTC1P68032 377 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ACTA1P68133 377 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 HLXQ14774 488 aaPredicted RBP6.87□□□□□ -1.31
USP40-216ENST00000485943 TEX30Q5JUR7 227 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 BCL2L15Q5TBC7 163 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 SLX4IPQ5VYV7 408 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 TTC23Q5W5X9 447 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 CYB5R2Q6BCY4 276 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 LRRN1Q6UXK5 716 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ZNF786Q8N393 782 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 MAPK1IP1LQ8NDC0 245 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 BBS1Q8NFJ9 593 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 OR8G5Q8NG78 346 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 OTOSQ8NHW6 89 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 HAVCR1Q96D42 359 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 REEP6Q96HR9 211 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ZNF75AQ96N20 296 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 TEAD3Q99594 435 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 ADAT1Q9BUB4 502 aaKnown RBP6.87□□□□□ -1.31
USP40-216ENST00000485943 PAPOLGQ9BWT3 736 aaKnown RBP6.87□□□□□ -1.31
USP40-216ENST00000485943 GABARAPL3Q9BY60 117 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 BPESC1Q9GZL8 116 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 RGCCQ9H4X1 137 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 DCLRE1BQ9H816 532 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 C14orf119Q9NWQ9 140 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 SMPD3Q9NY59 655 aaPredicted RBP6.87□□□□□ -1.31
USP40-216ENST00000485943 KCNS2Q9ULS6 477 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 PPP1R3CQ9UQK1 317 aa6.87□□□□□ -1.31
USP40-216ENST00000485943 IGLV3-9A0A075B6K5 115 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 IGHV4-30-2A0A087WSY4 118 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 LOC100130705A0A1B0GUX0 176 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 IRGMA1A4Y4 181 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 IFNL4K9M1U5 179 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 ZNF254O75437 659 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 RPP14O95059 124 aaKnown RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 ALPLP05186 524 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 HTR1FP30939 366 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 DDOSTP39656 456 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 MTNR1AP48039 350 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 TMEM33P57088 247 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 ZNF121P58317 390 aaPredicted RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 MVKQ03426 396 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 PSG7Q13046 419 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 CDK5R2Q13319 367 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 TMED1Q13445 227 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 KCNJ8Q15842 424 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 MST1LQ2TV78 715 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 C12orf73Q69YU5 71 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 FAM166AQ6J272 317 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 ZNF322Q6U7Q0 402 aaPredicted RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 FBXW12Q6X9E4 464 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 PLEKHG7Q6ZR37 379 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 Q71RC1 249 aaPredicted RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 KLHL36Q8N4N3 616 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 DHRSXQ8N5I4 330 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 BOLLQ8N9W6 283 aaKnown RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 SPERTQ8NA61 448 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 CSNK2A3Q8NEV1 391 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 OR10AD1Q8NGE0 317 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 OR2AE1Q8NHA4 323 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 C10orf105Q8TEF2 133 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 RNFT2Q96EX2 444 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 MAP6Q96JE9 813 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 RDH12Q96NR8 316 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 C1QTNF5Q9BXJ0 243 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 NMNAT2Q9BZQ4 307 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 MARCH7Q9H992 704 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 FN3KRPQ9HA64 309 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 NEK6Q9HC98 313 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 ABCB9Q9NP78 766 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 DDX28Q9NUL7 540 aaKnown RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 USE1Q9NZ43 259 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 TREM2Q9NZC2 230 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 MYEF2Q9P2K5 600 aaKnown RBP6.86□□□□□ -1.31
USP40-216ENST00000485943 IL19Q9UHD0 177 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 ZNF391Q9UJN7 358 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 GNG8Q9UK08 70 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 TEX15Q9BXT5 2789 aa6.86□□□□□ -1.31
USP40-216ENST00000485943 RTTNQ86VV8 2226 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 MAST4O15021 2626 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 HRNRQ86YZ3 2850 aaPredicted RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 A0A1B0GVI7 797 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 TMEM129A0AVI4 362 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 CD300LBA8K4G0 201 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 IQCF6A8MYZ5 107 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 LYNX1G3V0Z9 82 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 H3BNX3 289 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 APOL3O95236 402 aa6.85□□□□□ -1.31
USP40-216ENST00000485943 FADS2O95864 444 aaKnown RBP6.85□□□□□ -1.31
USP40-216ENST00000485943 SERPINA3P01011 423 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms