RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 UGT3A2Q3SY77 523 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 MINOS1Q5TGZ0 78 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 C10orf99Q6UWK7 81 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 ZYG11AQ6WRX3 759 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 RANBP3LQ86VV4 465 aaPredicted RBP6.33□□□□□ -1.4
USP54-211ENST00000474929 C10orf111Q8N326 155 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 OR13D1Q8NGV5 346 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 ZBTB9Q96C00 473 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 LYZL4Q96KX0 146 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 C1orf50Q9BV19 199 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 GON7Q9BXV9 100 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 TUBB1Q9H4B7 451 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 ASIC5Q9NY37 505 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 NDUFAF1Q9Y375 327 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 FIS1Q9Y3D6 152 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 MINOS1-NBL1R4GNA1 71 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 IGHV3OR15-7A0A075B7D8 119 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 A0A1W2PPL8 197 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 CXorf65A6NEN9 183 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 TRIM64CA6NLI5 447 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 LRRN3E7EW58 273 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 ACOT8O14734 319 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SIGLEC5O15389 551 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 RHBDL1O75783 438 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 ARG1P05089 322 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 DUX4L4P0CJ87 422 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SPNP16150 400 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 COX7A1P24310 79 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 BRS3P32247 399 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 KIR3DL2P43630 455 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 CLNS1AP54105 237 aaKnown RBP6.32□□□□□ -1.4
USP54-211ENST00000474929 CTXN1P60606 82 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 VSNL1P62760 191 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 HOXC5Q00444 222 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SLC34A1Q06495 639 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 FHL3Q13643 280 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 ENDOGQ14249 297 aaKnown RBP6.32□□□□□ -1.4
USP54-211ENST00000474929 SRSF7Q16629 238 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP54-211ENST00000474929 STUMQ69YW2 141 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 ZNF770Q6IQ21 691 aaPredicted RBP6.32□□□□□ -1.4
USP54-211ENST00000474929 ACSM6Q6P461 480 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SLC25A47Q6Q0C1 308 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 TIFABQ6ZNK6 161 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 PGAP1Q75T13 922 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 LHFPL4Q7Z7J7 247 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 MKXQ8IYA7 352 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 FAM185AQ8N0U4 392 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 FGFRL1Q8N441 504 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 DRAM1Q8N682 238 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 BBS10Q8TAM1 723 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 LRRC29Q8WV35 223 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 TESCQ96BS2 214 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 NMD3Q96D46 503 aaKnown RBP6.32□□□□□ -1.4
USP54-211ENST00000474929 DUX3Q96PT4 197 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 CDRT15Q96T59 188 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SLC25A33Q9BSK2 321 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 SPATA5L1Q9BVQ7 753 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 HDHD2Q9H0R4 259 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 TNFRSF12AQ9NP84 129 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 POLE4Q9NR33 117 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 INIPQ9NRY2 104 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 BTNL2Q9UIR0 455 aa6.32□□□□□ -1.4
USP54-211ENST00000474929 ODF3BA8MYP8 253 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CHP2O43745 196 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 PSPNO60542 156 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 RBP4P02753 201 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 ASAH2BP0C7U1 165 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 RHCEP18577 417 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CA6P23280 308 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 HTR2AP28223 471 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CDX1P47902 265 aaPredicted RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 ENTPD1P49961 510 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 UGT2B15P54855 530 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 RGS8P57771 180 aaPredicted RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 DSTNP60981 165 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 FMODQ06828 376 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CASP8Q14790 479 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 KRT72Q14CN4 511 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 HAGHQ16775 308 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CXorf66Q5JRM2 361 aaPredicted RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 C9orf152Q5JTZ5 239 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 C6orf136Q5SQH8 315 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 ARMC4Q5T2S8 1044 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 ZNF626Q68DY1 528 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 TEX38Q6PEX7 206 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 LCNL1Q6ZST4 164 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 MRPL21Q7Z2W9 205 aaKnown RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 ZNF329Q86UD4 541 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 CALHM1Q8IU99 346 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 EGFL6Q8IUX8 553 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 FOXRED2Q8IWF2 684 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 EIF1ADQ8N9N8 165 aaKnown RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 OR1F12Q8NHA8 337 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 LRRC8CQ8TDW0 803 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 ACMSDQ8TDX5 336 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 EPS8L3Q8TE67 593 aaKnown RBP6.31□□□□□ -1.4
USP54-211ENST00000474929 C4orf3Q8WVX3 66 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 PANX1Q96RD7 426 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 PARD6BQ9BYG5 372 aa6.31□□□□□ -1.4
USP54-211ENST00000474929 PSMC3IPQ9P2W1 217 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms