RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PPP1R1AQ13522 171 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 CASTOR1Q8WTX7 329 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 ST8SIA4Q92187 359 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 ZC3H10Q96K80 434 aaKnown RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 LPAR5Q9H1C0 372 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 SCPEP1Q9HB40 452 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 PRR13Q9NZ81 148 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 PLEKHA6Q9Y2H5 1048 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 AUP1Q9Y679 476 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 FAM25EA8MYX2 175 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 TP53I11O14683 189 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 ONECUT2O95948 504 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 RRASP10301 218 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 TMEM50BP56557 158 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 H3F3AP84243 136 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 AANATQ16613 207 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 RSPO1Q2MKA7 263 aaPredicted RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 ZNF529Q6P280 563 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 MAFIPQ8WZ33 124 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 NAT6Q93015 286 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 FOXRED1Q96CU9 486 aaPredicted RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 LYZL4Q96KX0 146 aa16.83■□□□□ 0.28
VIM-203ENST00000469543 MRPS28Q9Y2Q9 187 aaKnown RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 NOP16Q9Y3C1 178 aaKnown RBP16.83■□□□□ 0.28
VIM-203ENST00000469543 SPENQ96T58 3664 aaKnown RBP16.82■□□□□ 0.28
VIM-203ENST00000469543 RAD51DO75771 328 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 PMS2P2O95744 297 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 PI3P19957 117 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 GPR85P60893 370 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 OR10R2Q8NGX6 335 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 GPER1Q99527 375 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 SLC25A21Q9BQT8 299 aaPredicted RBP16.82■□□□□ 0.28
VIM-203ENST00000469543 H3BUI4 141 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 CD63P08962 238 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 VAMP1P23763 118 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 TRIM61Q5EBN2 209 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 TCEAL6Q6IPX3 200 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 TCEAL3Q969E4 200 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 MFFQ9GZY8 342 aa16.82■□□□□ 0.28
VIM-203ENST00000469543 TMEM14DPA8MWL7 114 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 PATE4P0C8F1 98 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 SSBP1Q04837 148 aaKnown RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 IL11RAQ14626 422 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 YRDCQ86U90 279 aaKnown RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 RELL2Q8NC24 303 aaPredicted RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 EDEM2Q9BV94 578 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 TMPRSS13Q9BYE2 586 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 WDR13Q9H1Z4 485 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 CRTAPO75718 401 aaPredicted RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 ERCC1P07992 297 aaPredicted RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 RAB6AP20340 208 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 PLXDC2Q6UX71 529 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 KCTD9Q7L273 389 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 AGBL5Q8NDL9 886 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 WBP1Q96G27 269 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 ALX4Q9H161 411 aaPredicted RBP16.81■□□□□ 0.28
VIM-203ENST00000469543 HDGFL3Q9Y3E1 203 aa16.81■□□□□ 0.28
VIM-203ENST00000469543 LOC102723996A0A087X1L8 192 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 A0A0J9YW62 118 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 ZNHIT1O43257 154 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 STK17BO94768 372 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 BPNT1O95861 308 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 FAHP16930 419 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 EIF1P41567 113 aaKnown RBP16.8■□□□□ 0.28
VIM-203ENST00000469543 SLC35A1P78382 337 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 BAMBIQ13145 260 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 CRIP3Q6Q6R5 217 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 RPS19BP1Q86WX3 136 aaKnown RBP16.8■□□□□ 0.28
VIM-203ENST00000469543 MAML2Q8IZL2 1156 aaPredicted RBP16.8■□□□□ 0.28
VIM-203ENST00000469543 BEST3Q8N1M1 668 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 MARCH1Q8TCQ1 289 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 PTX4Q96A99 478 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 ZBTB8AQ96BR9 441 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 ARHGAP5-AS1Q96IT6 56 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 SRXN1Q9BYN0 137 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 IFT46Q9NQC8 304 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 OR5H14A6NHG9 310 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 LGALS8O00214 317 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 RLN2P04090 185 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 NMBP08949 121 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 LIFP15018 202 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 CD34P28906 385 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 STARP49675 285 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 ZNF546Q86UE3 836 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 GTPBP8Q8N3Z3 284 aaPredicted RBP16.8■□□□□ 0.28
VIM-203ENST00000469543 UQCC2Q9BRT2 126 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 SLCO5A1Q9H2Y9 848 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 UPB1Q9UBR1 384 aa16.8■□□□□ 0.28
VIM-203ENST00000469543 BOD1L1Q8NFC6 3051 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 CSNK1A1P48729 337 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 CAPZA1P52907 286 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 FAM74A1Q5RGS3 127 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 RAB12Q6IQ22 244 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 GSG1LQ6UXU4 331 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 PDCD10Q9BUL8 212 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 WDR54Q9H977 334 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 DSPP15924 2871 aaKnown RBP16.79■□□□□ 0.28
VIM-203ENST00000469543 NCKAP5O14513 1909 aa16.79■□□□□ 0.28
VIM-203ENST00000469543 HMSDA8MTL9 139 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms