RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CD96P40200 585 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 MEF2DQ14814 521 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 RSPO4Q2I0M5 234 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF468Q5VIY5 522 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-217ENST00000466159 LIN54Q6MZP7 749 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 DTX1Q86Y01 620 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 UBALD2Q8IYN6 164 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 LRRC18Q8N456 261 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 PRRT1Q99946 306 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 C1QTNF6Q9BXI9 259 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 ANGPTL4Q9BY76 406 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 LPAR5Q9H1C0 372 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF160Q9HCG1 818 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 MYOZ1Q9NP98 299 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-217ENST00000466159 IFT46Q9NQC8 304 aa7.89□□□□□ -1.15
SYNE1-217ENST00000466159 IGKV1-9A0A0C4DH69 117 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 F5H5K5 113 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 NTN3O00634 580 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CCSO14618 274 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SHOXO15266 292 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SCO1O75880 301 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 PMP2P02689 132 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 TDGF1P13385 188 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 LIFP15018 202 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 FKBP2P26885 142 aaKnown RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CD34P28906 385 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CSNK1A1P48729 337 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 GMFBP60983 142 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 EXT1Q16394 746 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 PLAC9Q5JTB6 97 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 WDR5BQ86VZ2 330 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM156Q8N614 296 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 COQ8AQ8NI60 647 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF775Q96BV0 537 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 LIN37Q96GY3 246 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM41AQ96HV5 264 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SEC22AQ96IW7 307 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 MFFQ9GZY8 342 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CST11Q9H112 138 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SLC2A8Q9NY64 477 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 RDH8Q9NYR8 311 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 NOP16Q9Y3C1 178 aaKnown RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CELSR3Q9NYQ7 3312 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 A0A087WZY1 265 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 OR5H15A6NDH6 313 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 RFPL4AA6NLU0 287 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 OR2AT4A6NND4 320 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 C9J4A7 227 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 RFPL4AL1F8VTS6 287 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SNAPC5O75971 98 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 STK17BO94768 372 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CCL1P22362 96 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CASRP41180 1078 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 SSR4P51571 173 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 TMEM50BP56557 158 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 ZFP36L1Q07352 338 aaKnown RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 PPP1R1AQ13522 171 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 CLVS2Q5SYC1 327 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 GSG1LQ6UXU4 331 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 PGAP1Q75T13 922 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 DOK3Q7L591 496 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 RPS19BP1Q86WX3 136 aaKnown RBP7.88□□□□□ -1.15
SYNE1-217ENST00000466159 IQCF2Q8IXL9 164 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 BEST3Q8N1M1 668 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 OR5D18Q8NGL1 313 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 OR14K1Q8NGZ2 314 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 PAQR8Q8TEZ7 354 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 NPRL2Q8WTW4 380 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 MARVELD3Q96A59 401 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 WBP1Q96G27 269 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 LYZL4Q96KX0 146 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 GPER1Q99527 375 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 NARFLQ9H6Q4 476 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 FBLN5Q9UBX5 448 aa7.88□□□□□ -1.15
SYNE1-217ENST00000466159 TNFSF11O14788 317 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CDC14BO60729 498 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CD63P08962 238 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 MSR1P21757 451 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZBTB25P24278 435 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 GUCA1AP43080 201 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SLC6A9P48067 706 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 DSCR4P56555 118 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 GRB2P62993 217 aaKnown RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ENDOGQ14249 297 aaKnown RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 LRRC37A5PQ49AS3 106 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SLC25A42Q86VD7 318 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SLC38A6Q8IZM9 456 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SPERTQ8NA61 448 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ADAD2Q8NCV1 583 aaKnown RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 OR5M8Q8NGP6 311 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 OR2Y1Q8NGV0 311 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 M1APQ8TC57 530 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ST8SIA4Q92187 359 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 SLC39A7Q92504 469 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 ZNF837Q96EG3 531 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CCDC120Q96HB5 630 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 PGAM5Q96HS1 289 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 CXorf58Q96LI9 332 aa7.87□□□□□ -1.15
SYNE1-217ENST00000466159 RBM24Q9BX46 236 aaKnown RBP7.87□□□□□ -1.15
SYNE1-217ENST00000466159 FN3KRPQ9HA64 309 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms