RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FREM3P0C091 2139 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 GIMD1P0DJR0 217 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 LIPCP11150 499 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 GNB3P16520 340 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 VAMP1P23763 118 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 ZNF41P51814 821 aaPredicted RBP10.03□□□□□ -0.8
USP4-205ENST00000431357 CLRN1P58418 232 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 PPIAP62937 165 aaKnown RBP10.03□□□□□ -0.8
USP4-205ENST00000431357 FOXK1P85037 733 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 EIF3IQ13347 325 aaKnown RBP10.03□□□□□ -0.8
USP4-205ENST00000431357 CCDC157Q569K6 752 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 FAM74A1Q5RGS3 127 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 VAX1Q5SQQ9 334 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 RHBDD2Q6NTF9 364 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 WDR74Q6RFH5 385 aaPredicted RBP10.03□□□□□ -0.8
USP4-205ENST00000431357 RABEPKQ7Z6M1 372 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 ANKRD37Q7Z713 158 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 WDFY1Q8IWB7 410 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 ZNF101Q8IZC7 436 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 ARRDC1Q8N5I2 433 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 APCDD1LQ8NCL9 501 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 OR5L2Q8NGL0 311 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 KCNG3Q8TAE7 436 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 STOML3Q8TAV4 291 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 RELTQ969Z4 430 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 LPAR5Q9H1C0 372 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 BIN3Q9NQY0 253 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 NDRG3Q9UGV2 375 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 SHPKQ9UHJ6 478 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 VDAC3Q9Y277 283 aa10.03□□□□□ -0.8
USP4-205ENST00000431357 ALPK2Q86TB3 2170 aa10.02□□□□□ -0.8
USP4-205ENST00000431357 PCDH15Q96QU1 1955 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 LOC100509620A0A075B734 347 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 TRBV6-7A0A0A0MS04 114 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 C2orf72A6NCS6 295 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 OR2AT4A6NND4 320 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 NUDT19A8MXV4 375 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 SIGLEC6O43699 453 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 IGHG1P01857 330 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 CRHP06850 196 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 HEXBP07686 556 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 H2AFB1P0C5Y9 115 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 AKR1C4P17516 323 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 AVPR2P30518 371 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 AKR1D1P51857 326 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 NAAAQ02083 359 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 TMEM128Q5BJH2 165 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 KCTD9Q7L273 389 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 NAA40Q86UY6 237 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 NOXO1Q8NFA2 376 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 TMEM185AQ8NFB2 350 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 OR10S1Q8NGN2 331 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 TERB2Q8NHR7 220 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 CASTOR1Q8WTX7 329 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 ZNF75AQ96N20 296 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 EMC6Q9BV81 110 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 ZNF768Q9H5H4 540 aaKnown RBP10.02□□□□□ -0.81
USP4-205ENST00000431357 CHMP1AQ9HD42 196 aaPredicted RBP10.02□□□□□ -0.81
USP4-205ENST00000431357 PPP4R1LQ9P1A2 415 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 B3GAT1Q9P2W7 334 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 MRPS28Q9Y2Q9 187 aaKnown RBP10.02□□□□□ -0.81
USP4-205ENST00000431357 CDH23Q9H251 3354 aa10.02□□□□□ -0.81
USP4-205ENST00000431357 PCNX3Q9H6A9 2034 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 IGLV3-32A0A0A0MS00 114 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 IGHV3-20A0A0C4DH32 117 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 C5orf51A6NDU8 294 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 CEACAM18A8MTB9 384 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 F8VVB4 439 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 F8VWA3 439 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 PMP2P02689 132 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 SMIM6P0DI80 62 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 SRFP11831 508 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 SELLP14151 372 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 ATXN7L3Q14CW9 347 aaPredicted RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 ELP2Q6IA86 826 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 GLIPR1L1Q6UWM5 242 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 ADAD2Q8NCV1 583 aaKnown RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 OR4K17Q8NGC6 315 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 OR51E1Q8TCB6 317 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 RAB3CQ96E17 227 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 LRRC46Q96FV0 321 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 ZNF251Q9BRH9 671 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 FOXQ1Q9C009 403 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 SLC22A11Q9NSA0 550 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 KLRF1Q9NZS2 232 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 POLR1DQ9Y2S0 133 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 TEX13DA0A0J9YY54 714 aaPredicted RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 EEF1E1-BLOC1S5C9J1V9 151 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 H3BML4 177 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 DNASE2O00115 360 aaPredicted RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 SMAD9O15198 467 aaKnown RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 TOX3O15405 576 aaPredicted RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 FGF16O43320 207 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 PGA4P0DJD7 388 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 PGA3P0DJD8 388 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 TPT1P13693 172 aaKnown RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 HIST1H1DP16402 221 aaKnown RBP10.01□□□□□ -0.81
USP4-205ENST00000431357 CCL1P22362 96 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 GABREP78334 506 aa10.01□□□□□ -0.81
USP4-205ENST00000431357 MC2RQ01718 297 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms