RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ZNF773Q6PK81 442 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 BTNL3Q6UXE8 466 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 HACD2Q6Y1H2 254 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 C18orf65Q6ZTR6 163 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 PGAP1Q75T13 922 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 SSX9Q7RTT3 188 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 PHC2Q8IXK0 858 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 C4orf33Q8N1A6 199 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TRAM1L1Q8N609 369 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM35BQ8NCS4 154 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 OR4M1Q8NGD0 313 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 OR56A4Q8NGH8 313 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 OR2A12Q8NGT7 310 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 OR2T6Q8NHC8 308 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 SPATA3Q8NHX4 192 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 SLC7A6Q92536 515 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 RBPMSQ93062 196 aaKnown RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TNFRSF13CQ96RJ3 184 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 NODALQ96S42 347 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 KCTD14Q9BQ13 255 aaPredicted RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TUBGCP2Q9BSJ2 902 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TMEM121Q9BTD3 319 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 CABLES2Q9BTV7 478 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 THTPAQ9BU02 230 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 MED18Q9BUE0 208 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 ROGDIQ9GZN7 287 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 ING2Q9H160 280 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 RHBGQ9H310 441 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 TCEAL2Q9H3H9 227 aaPredicted RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 CDC42EP4Q9H3Q1 356 aaKnown RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 SAV1Q9H4B6 383 aaPredicted RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 ELOVL3Q9HB03 270 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 ELL3Q9HB65 397 aaPredicted RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 FGF22Q9HCT0 170 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 IL1RAPQ9NPH3 570 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 NANSQ9NR45 359 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 LYARQ9NX58 379 aaKnown RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 PSMC3IPQ9P2W1 217 aaPredicted RBP3.34□□□□□ -1.87
HMGB3-203ENST00000430118 KIF25Q9UIL4 384 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 ICAM5Q9UMF0 924 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 POMPQ9Y244 141 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 PPIL1Q9Y3C6 166 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 PYGO1Q9Y3Y4 419 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 KNL1Q8NG31 2342 aa3.34□□□□□ -1.87
HMGB3-203ENST00000430118 NBASA2RRP1 2371 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SETD2Q9BYW2 2564 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 TRAV26-1A0A087WT03 109 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CXorf51AA0A1B0GTR3 108 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PNMA8CA0A1B0GUJ8 204 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 NCF1BA6NI72 391 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RFPL4AA6NLU0 287 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 NCF1CA8MVU1 366 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 ARHGEF33A8MVX0 844 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RFPL4AL1F8VTS6 287 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 H7C2Y5 167 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 K7EM74 188 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 K7ERQ8 282 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RGS5O15539 181 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PRKYO43930 277 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 MRPS14O60783 128 aaKnown RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 ZG16O60844 167 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 STX11O75558 287 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SCO1O75880 301 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RPP14O95059 124 aaKnown RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 VAPBO95292 243 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 IFNA7P01567 189 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 MBP02144 154 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CRHP06850 196 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CTSLP07711 333 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 HOXC4P09017 264 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 H2BFMP0C1H6 154 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 OR4E1P0C645 316 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 OR9G9P0C7N8 305 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RALBP11234 206 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 MLNP12872 115 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RNH1P13489 461 aaKnown RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SELEP16581 610 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PAX6P26367 422 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 HLA-DMAP28067 261 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CASP1P29466 404 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CCR1P32246 355 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SPRP35270 261 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 NUP62P37198 522 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 RPL35P42766 123 aaKnown RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CASP4P49662 377 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SERPINB9P50453 376 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 AKR1D1P51857 326 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PLA2G16P53816 162 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 DEFA6Q01524 100 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 ASAH1Q13510 395 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 EXOC3L4Q17RC7 722 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 MICBQ29980 383 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 SNAI3Q3KNW1 292 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 MOGAT2Q3SYC2 334 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 CDNFQ49AH0 187 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PRR30Q53SZ7 412 aaPredicted RBP3.33□□□□□ -1.88
HMGB3-203ENST00000430118 Q5BKY6 102 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 PDZK1Q5T2W1 519 aa3.33□□□□□ -1.88
HMGB3-203ENST00000430118 KDM4DQ6B0I6 523 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms