RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RAB1AP62820 205 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 ZP2Q05996 745 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 CST6Q15828 149 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 ZNF124Q15973 351 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 OPN5Q6U736 354 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 HIST2H3AQ71DI3 136 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 Q7L0L9 218 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 LHFPL1Q86WI0 220 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 UBAC2Q8NBM4 344 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 OR10G6Q8NH81 332 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 PHOSPHO2Q8TCD6 241 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 DNAJA3Q96EY1 480 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 GNRHR2Q96P88 292 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 APOOQ9BUR5 198 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 PTGES2Q9H7Z7 377 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 CREBZFQ9NS37 354 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 STARD5Q9NSY2 213 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 PARPBPQ9NWS1 579 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 VSX1Q9NZR4 365 aaPredicted RBP9.52□□□□□ -0.89
USP54-204ENST00000422491 FBLN5Q9UBX5 448 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 SLC5A6Q9Y289 635 aa9.52□□□□□ -0.89
USP54-204ENST00000422491 A0A0A6YYD4 124 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 A0A1W2PP55 124 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 K7EPK0 472 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 BGLAPP02818 100 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 DANCRP0C864 163 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 HIST1H1BP16401 226 aaKnown RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 FCGR2CP31995 323 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 SP3Q02447 781 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 TOMM34Q15785 309 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 ACKR1Q16570 336 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 ACTBL2Q562R1 376 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 AADACL3Q5VUY0 350 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 FOXRED2Q8IWF2 684 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 FAM71E2Q8N5Q1 922 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 FAM160A2Q8N612 972 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 ZNF615Q8N8J6 731 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 METTL21AQ8WXB1 218 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 CYYR1Q96J86 154 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 OR2M4Q96R27 311 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 EIF5A2Q9GZV4 153 aaKnown RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 ARV1Q9H2C2 271 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 FAM212BQ9NTI7 297 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 GAR1Q9NY12 217 aaKnown RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 MKI67P46013 3256 aaKnown RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 PRSS38A1L453 326 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 P2RY10O00398 339 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 BCAT2O15382 392 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 PRKNO60260 465 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 MPZL1O95297 269 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 RPL27P61353 136 aaKnown RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 C2orf27AQ580R0 203 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 PLAC9Q5JTB6 97 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 C1QL3Q5VWW1 255 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 VITQ6UXI7 678 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 CHRDL2Q6WN34 429 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 DMRTC2Q8IXT2 367 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 SLC22A24Q8N4F4 322 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 BAHD1Q8TBE0 780 aaPredicted RBP9.51□□□□□ -0.89
USP54-204ENST00000422491 FGGYQ96C11 551 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 MEMO1Q9Y316 297 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 FREM3P0C091 2139 aa9.51□□□□□ -0.89
USP54-204ENST00000422491 MASP2O00187 686 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 DEDDO75618 318 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SFTPBP07988 381 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 LINC00271P0C7V0 271 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 BTF3P20290 206 aaKnown RBP9.5□□□□□ -0.89
USP54-204ENST00000422491 S100A2P29034 98 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SGCGQ13326 291 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SSX9Q7RTT3 188 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 OR9A4Q8NGU2 314 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 OR13G1Q8NGZ3 307 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 CCL4L1Q8NHW4 92 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SMIM3Q9BZL3 60 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 LPAR5Q9H1C0 372 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SLC35B3Q9H1N7 401 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 DOK5Q9P104 306 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 THAP10Q9P2Z0 257 aaPredicted RBP9.5□□□□□ -0.89
USP54-204ENST00000422491 OSGIN2Q9Y236 505 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 TMEM184BQ9Y519 407 aaPredicted RBP9.5□□□□□ -0.89
USP54-204ENST00000422491 LTBP2Q14767 1821 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 FIGNL2A6NMB9 653 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 HCRTR1O43613 425 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 ZNF354AO60765 605 aaPredicted RBP9.5□□□□□ -0.89
USP54-204ENST00000422491 OR2C1O95371 312 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 GSTP1P09211 210 aaKnown RBP9.5□□□□□ -0.89
USP54-204ENST00000422491 GLRA1P23415 457 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 FHITP49789 147 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 RBP2P50120 134 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 EMP2P54851 167 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 RAP1AP62834 184 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 ZNF616Q08AN1 781 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 PCK2Q16822 640 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 COX15Q7KZN9 410 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 CD300LFQ8TDQ1 290 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 RHBDD1Q8TEB9 315 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 MR1Q95460 341 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 ERGIC1Q969X5 290 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 MUCL1Q96DR8 90 aa9.5□□□□□ -0.89
USP54-204ENST00000422491 SCGB3A2Q96PL1 93 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms