RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 MANBALQ9NQG1 85 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 KLRC4-KLRK1H3BQV0 150 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 GUSBP08236 651 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 FOXK2Q01167 660 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SPNS3Q6ZMD2 512 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 BAP18Q8IXM2 172 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF738Q8NE65 137 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 CSF2RAP15509 400 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 RAB38P57729 211 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 PLPP6Q8IY26 295 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 RHBDD1Q8TEB9 315 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 TWSG1Q9GZX9 223 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 PRDM7Q9NQW5 492 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 SLC45A2Q9UMX9 530 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 ZFP30Q9Y2G7 519 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 MISP3Q96FF7 219 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 HIST1H1CP16403 213 aaKnown RBP12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 IL10RAQ13651 578 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 P2RY12Q9H244 342 aa12.17□□□□□ -0.46
CCDC88A-204ENST00000413716 LOC107984156A0A0G2JMH3 177 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 A0A0U1RQF3 1178 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OPN1MWP04001 364 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OPN1MW2P0DN77 364 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OPN1MW3P0DN78 364 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 GPX3P22352 226 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PMP22Q01453 160 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 SMN1Q16637 294 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ARL17AQ8IVW1 177 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF775Q96BV0 537 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 C2orf50Q96LR7 162 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 CITED2Q99967 270 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PLSCR3Q9NRY6 295 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 SLIT3O75094 1523 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 MFNGO00587 321 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 CFHP08603 1231 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 FKBP2P26885 142 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM102Q8N9M5 508 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 KIAA2026Q5HYC2 2103 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 SIRPB1O00241 398 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF195O14628 629 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 GABRB1P18505 474 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM65Q6PI78 240 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 MAML2Q8IZL2 1156 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 CGGBP1Q9UFW8 167 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PGGT1BP53609 377 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PRSS16Q9NQE7 514 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 SERINC4A6NH21 518 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF737O75373 536 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 GP2P55259 537 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 RACK1P63244 317 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PRSS45Q7RTY3 260 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR150Q8NGU9 434 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 KLRG1Q96E93 195 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM56Q96MV1 263 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ONECUT1Q9UBC0 465 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 A0A0G2JLL6 359 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF324O75467 553 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 BSGP35613 385 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 SNRPEP62304 92 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 ZBTB37Q5TC79 503 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PRRT2Q7Z6L0 340 aaPredicted RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OR6S1Q8NH40 331 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM40Q8WWA1 233 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 RCL1Q9Y2P8 373 aaKnown RBP12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 MON2Q7Z3U7 1717 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 DOCK6Q96HP0 2047 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OR2J2O76002 312 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 C1orf105O95561 183 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 GPR75O95800 540 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 NRASP01111 189 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 OR2G2Q8NGZ5 317 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 PPP1R1CQ8WVI7 109 aa12.16□□□□□ -0.46
CCDC88A-204ENST00000413716 DNAL4O96015 105 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 CA2P00918 260 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 ACHEP22303 614 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 DCDP81605 110 aaKnown RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 FAM71E1Q6IPT2 247 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 LPAR5Q9H1C0 372 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 MSL2Q9HCI7 577 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TMEM127O75204 238 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 ACP1P24666 158 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 CLDN18P56856 261 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 GABRA6Q16445 453 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 WNT7AO00755 349 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 GALNT16Q8N428 558 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 BEND2Q8NDZ0 799 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 OR52I2Q8NH67 350 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 SYNGR2O43760 224 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 OR4E1P0C645 316 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 SEMA3BQ13214 749 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 ZNF789Q5FWF6 425 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TRGV10A0A0A0MS01 117 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TMED7-TICAM2A0A0A6YYA0 188 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 CAMPP49913 170 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 ERASQ7Z444 233 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 MAGT1Q9H0U3 335 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TMED7Q9Y3B3 224 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 ACAA1P09110 424 aaPredicted RBP12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 KIR2DS2P43631 304 aa12.15□□□□□ -0.46
CCDC88A-204ENST00000413716 TCTN1Q2MV58 587 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms