RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 M0R135 149 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SSX4O60224 188 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 GPRIN2O60269 458 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 H2BFMP0C1H6 154 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 DANCRP0C864 163 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 C21orf33P30042 268 aaPredicted RBP7.88□□□□□ -1.15
VPS53-203ENST00000401468 ATP6V1E1P36543 226 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ETV1P50549 477 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 TPTEP56180 551 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 KRTAP1-1Q07627 177 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 MRPL28Q13084 256 aaKnown RBP7.88□□□□□ -1.15
VPS53-203ENST00000401468 KCTD21Q4G0X4 260 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 TMEM154Q6P9G4 183 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SLC22A25Q6T423 547 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 PLEKHG7Q6ZR37 379 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 Q6ZSR3 168 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 AHSA2Q719I0 299 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 KRT74Q7RTS7 529 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ZNF101Q8IZC7 436 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ZNF786Q8N393 782 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ZNF540Q8NDQ6 660 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 OR52N1Q8NH53 320 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 HAVCR2Q8TDQ0 301 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SLC7A6Q92536 515 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SGCDQ92629 289 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 MYDGFQ969H8 173 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ITFG2Q969R8 447 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SPTSSAQ969W0 71 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 SPSB4Q96A44 273 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ZNF799Q96GE5 643 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 C4orf45Q96LM5 186 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 MYCBPQ99417 103 aaPredicted RBP7.88□□□□□ -1.15
VPS53-203ENST00000401468 ALG8Q9BVK2 526 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 BCL2L14Q9BZR8 327 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 CXorf56Q9H5V9 222 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 MOB1AQ9H8S9 216 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 ELOVL3Q9HB03 270 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 FAM206AQ9NX38 181 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 CISD1Q9NZ45 108 aaKnown RBP7.88□□□□□ -1.15
VPS53-203ENST00000401468 BLOC1S6Q9UL45 172 aa7.88□□□□□ -1.15
VPS53-203ENST00000401468 LSM2Q9Y333 95 aaKnown RBP7.88□□□□□ -1.15
VPS53-203ENST00000401468 IGLV3-9A0A075B6K5 115 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 A0A0U1RQV5 110 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 TRIM64CA6NLI5 447 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 PNPP00491 289 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 KRT8P05787 483 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 CCL2P13500 99 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 ZNF250P15622 560 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 ANOS1P23352 680 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 GLRXP35754 106 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 RAD52P43351 418 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 RIDAP52758 137 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 GP2P55259 537 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 UCP2P55851 309 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 OR12D2P58182 307 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 ACSM1Q08AH1 577 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 TBCEQ15813 527 aaPredicted RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 LIPNQ5VXI9 398 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 MBNL2Q5VZF2 373 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 ARL9Q6T311 187 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 FBXW12Q6X9E4 464 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 RFPL4BQ6ZWI9 263 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 LHFPL3Q86UP9 236 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 NAA40Q86UY6 237 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 LRRC75A-AS1Q8N1F1 130 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 NANOGP1Q8N7R0 232 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 OR52H1Q8NGJ2 320 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 RORBQ92753 470 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 APOBEC3DQ96AK3 386 aaPredicted RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 PELI1Q96FA3 418 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 MRPL48Q96GC5 212 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 MARS2Q96GW9 593 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 COG8Q96MW5 612 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 TBX5Q99593 518 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 KRTAP4-12Q9BQ66 201 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 CACNG6Q9BXT2 260 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 CDH20Q9HBT6 801 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 G6PC2Q9NQR9 355 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 CENPMQ9NSP4 180 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 ZNF701Q9NV72 531 aaPredicted RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 NUFIP1Q9UHK0 495 aaKnown RBP7.87□□□□□ -1.15
VPS53-203ENST00000401468 CLEC2DQ9UHP7 191 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 ATP23Q9Y6H3 246 aa7.87□□□□□ -1.15
VPS53-203ENST00000401468 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.87□□□□□ -1.159e-6■■□□□ 12.8
VPS53-203ENST00000401468 ANK3Q12955 4377 aaKnown RBP7.86□□□□□ -1.15
VPS53-203ENST00000401468 MXRA5Q9NR99 2828 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 IGHV4-30-2A0A087WSY4 118 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 A0A1B0GWJ7 208 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 PTGES3LE9PB15 166 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 F5H5K5 113 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 OVOL3O00110 214 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 MAGEB4O15481 346 aaPredicted RBP7.86□□□□□ -1.15
VPS53-203ENST00000401468 RGS10O43665 173 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 NGFP01138 241 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 TACSTD2P09758 323 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 MYL12AP19105 171 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 HSD11B1P28845 292 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 TGM4P49221 684 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 CX3CR1P49238 355 aa7.86□□□□□ -1.15
VPS53-203ENST00000401468 EVX1P49640 407 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms