RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 OR2AJ1Q8NGZ0 328 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 NABP1Q96AH0 204 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TMPRSS13Q9BYE2 586 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SRXN1Q9BYN0 137 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 GPN3Q9UHW5 284 aaPredicted RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 WDPCPO95876 746 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 PLATP00750 562 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 RAB3AP20336 220 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF93P35789 620 aaPredicted RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 LPAL2Q16609 132 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 AGBL5Q8NDL9 886 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 OR5D14Q8NGL3 314 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 PAQR8Q8TEZ7 354 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SSC4DQ8WTU2 575 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ZBTB8AQ96BR9 441 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 FOXRED1Q96CU9 486 aaPredicted RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SELENOIQ9C0D9 397 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 LPAR5Q9H1C0 372 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TP53I11O14683 189 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 SOCS1O15524 211 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 RAD51DO75771 328 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 BPNT1O95861 308 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 CYB5AP00167 134 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 EIF1P41567 113 aaKnown RBP11.78□□□□□ -0.52
CCDC3-202ENST00000378839 SEC61A1P61619 476 aaKnown RBP11.78□□□□□ -0.52
CCDC3-202ENST00000378839 SLC35A1P78382 337 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 HLXQ14774 488 aaPredicted RBP11.78□□□□□ -0.52
CCDC3-202ENST00000378839 SGCAQ16586 387 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 TRIM61Q5EBN2 209 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 AWAT2Q6E213 333 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 C1QL2Q7Z5L3 287 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 CHST4Q8NCG5 386 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 SLC25A43Q8WUT9 341 aaPredicted RBP11.78□□□□□ -0.52
CCDC3-202ENST00000378839 ALX4Q9H161 411 aaPredicted RBP11.78□□□□□ -0.52
CCDC3-202ENST00000378839 BANF2Q9H503 90 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 A0A0A6YYH2 397 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 A0A0J9YW62 118 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 A6NJ64 397 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF726A6NNF4 738 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 F5H5P2 479 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 PMS2P2O95744 297 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 NHLRC3Q5JS37 347 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 CLLU1Q5K131 121 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 TCEAL6Q6IPX3 200 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 GLIPR1L1Q6UWM5 242 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 COMMD2Q86X83 199 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM123Q8N131 208 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 LRRC18Q8N456 261 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 OR2Y1Q8NGV0 311 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 TCEAL3Q969E4 200 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 UQCC2Q9BRT2 126 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 UBQLN2Q9UHD9 624 aa11.78□□□□□ -0.52
CCDC3-202ENST00000378839 OR6C65A6NJZ3 312 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 OR2AT4A6NND4 320 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 TNFSF11O14788 317 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 KLK3P07288 261 aaPredicted RBP11.77□□□□□ -0.52
CCDC3-202ENST00000378839 DBHP09172 617 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 CCL1P22362 96 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM50BP56557 158 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 DHRS2Q13268 280 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 TAF13Q15543 124 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 RAET1LQ5VY80 246 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 OR14K1Q8NGZ2 314 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 TNFAIP8L1Q8WVP5 186 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM54Q969K7 222 aa11.77□□□□□ -0.52
CCDC3-202ENST00000378839 SAV1Q9H4B6 383 aaPredicted RBP11.77□□□□□ -0.52
CCDC3-202ENST00000378839 NXT1Q9UKK6 140 aaKnown RBP11.77□□□□□ -0.52
CCDC3-202ENST00000378839 UBE2QL1A1L167 161 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 L7N2F9 121 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 HRH1P35367 487 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 CD96P40200 585 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 MLF1P58340 268 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 B3GALT5-AS1P59052 145 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 SORDQ00796 357 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 TAGLNQ01995 201 aaKnown RBP11.77□□□□□ -0.53
CCDC3-202ENST00000378839 M1APQ8TC57 530 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 CLEC4MQ9H2X3 399 aaPredicted RBP11.77□□□□□ -0.53
CCDC3-202ENST00000378839 CNTRLQ7Z7A1 2325 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 FXYD6-FXYD2A0A087WZ82 144 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 IGLV3-1P01715 115 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 PPP3CBP16298 524 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 RPL35P42766 123 aaKnown RBP11.77□□□□□ -0.53
CCDC3-202ENST00000378839 SSR4P51571 173 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 TMUB2Q71RG4 321 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF584Q8IVC4 421 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 CDH26Q8IXH8 852 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 TMEM105Q8N8V8 129 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 ADAD2Q8NCV1 583 aaKnown RBP11.77□□□□□ -0.53
CCDC3-202ENST00000378839 OR10R2Q8NGX6 335 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 FXYD6Q9H0Q3 95 aa11.77□□□□□ -0.53
CCDC3-202ENST00000378839 CCSO14618 274 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 IFNA7P01567 189 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 CYC1P08574 325 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF20P17024 532 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 CXADRP78310 365 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 LIN54Q6MZP7 749 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 OPN5Q6U736 354 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 RPS19BP1Q86WX3 136 aaKnown RBP11.76□□□□□ -0.53
CCDC3-202ENST00000378839 ZNF283Q8N7M2 679 aa11.76□□□□□ -0.53
CCDC3-202ENST00000378839 OR9K2Q8NGE7 335 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms