RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PTCHD4Q6ZW05 846 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 TSEN54Q7Z6J9 526 aaKnown RBP11.35□□□□□ -0.59
VPS29-201ENST00000360579 OR2T12Q8NG77 320 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 OR2T6Q8NHC8 308 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 DYDC1Q8WWB3 177 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 SPTSSAQ969W0 71 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 RANBP3Q9H6Z4 567 aaPredicted RBP11.35□□□□□ -0.59
VPS29-201ENST00000360579 RAB18Q9NP72 206 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 SIRT7Q9NRC8 400 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 MRGBPQ9NV56 204 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 SIGLEC7Q9Y286 467 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 IER3IP1Q9Y5U9 82 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 SNX13Q9Y5W8 968 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 NOTCH3Q9UM47 2321 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 PLXNB1O43157 2135 aa11.35□□□□□ -0.59
VPS29-201ENST00000360579 IGLV1-36A0A0B4J1U3 117 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 MEIOCA2RUB1 952 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 J3KTA2 159 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 M0R135 149 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 FXYD1O00168 92 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 IMPA2O14732 288 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 FCN3O75636 299 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 GRPP07492 148 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 SAA4P35542 130 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 CDKN2AP42771 156 aaKnown RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 UBE2E1P51965 193 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 EMX1Q04741 257 aaPredicted RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 DBPQ10586 325 aaPredicted RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 NCR3LG1Q68D85 454 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 CFAP77Q6ZQR2 320 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 C1orf122Q6ZSJ8 110 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 CYP4Z1Q86W10 505 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 KLHDC1Q8N7A1 406 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 C11orf44Q8N8P7 122 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 BEND2Q8NDZ0 799 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 SLC26A10Q8NG04 563 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 C12orf43Q96C57 262 aaKnown RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 ZNF799Q96GE5 643 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 FAM46AQ96IP4 442 aaKnown RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 TSSK2Q96PF2 358 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 SIKE1Q9BRV8 207 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 RNPEPL1Q9HAU8 725 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 AURKAIP1Q9NWT8 199 aaPredicted RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 CYB5R1Q9UHQ9 305 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 PRPF19Q9UMS4 504 aaKnown RBP11.34□□□□□ -0.59
VPS29-201ENST00000360579 B9D1Q9UPM9 204 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 MAB21L2Q9Y586 359 aa11.34□□□□□ -0.59
VPS29-201ENST00000360579 BBIP1A8MTZ0 92 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 BHLHE40O14503 412 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 NDUFB3O43676 98 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 POU4F2Q12837 409 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 IFI44LQ53G44 452 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 OXLD1Q5BKU9 147 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 LRRC10Q5BKY1 277 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 ZNF826PQ6ZT77 177 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 VTCN1Q7Z7D3 282 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 NAA40Q86UY6 237 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 LINC00346Q8IVM7 164 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 C8orf46Q8TAG6 207 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 RSRC1Q96IZ7 334 aaKnown RBP11.33□□□□□ -0.6
VPS29-201ENST00000360579 CLPTM1LQ96KA5 538 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 CCL13Q99616 98 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 DCTN5Q9BTE1 182 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 OPA3Q9H6K4 179 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 KRCC1Q9NPI7 259 aaPredicted RBP11.33□□□□□ -0.6
VPS29-201ENST00000360579 FOXJ3Q9UPW0 622 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 SIGLEC9Q9Y336 463 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 TENM3Q9P273 2699 aa11.33□□□□□ -0.6
VPS29-201ENST00000360579 IGHV3OR15-7A0A075B7D8 119 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 A0A1W2PRD5 423 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 A0A1W2PRF3 423 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 A0A1W2PRM7 423 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 H3BUX3 64 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 DCTN6O00399 190 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 MRASO14807 208 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 RENP00797 406 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 ZNF92Q03936 586 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 PCK2Q16822 640 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 RFX4Q33E94 735 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 WDR38Q5JTN6 314 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 AGBL2Q5U5Z8 902 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 PGBD2Q6P3X8 592 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 OR6V1Q8N148 313 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 Q8N7P7 452 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 OR4F17Q8NGA8 305 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 OR8S1Q8NH09 359 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 PPP1R35Q8TAP8 253 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 SLC7A13Q8TCU3 470 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 TNFRSF14Q92956 283 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 OR4F4Q96R69 305 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 TMEM120AQ9BXJ8 343 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 TOR3AQ9H497 397 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 METTL8Q9H825 291 aaKnown RBP11.32□□□□□ -0.6
VPS29-201ENST00000360579 SRA1Q9HD15 236 aaKnown RBP11.32□□□□□ -0.6
VPS29-201ENST00000360579 PNRC2Q9NPJ4 139 aaKnown RBP11.32□□□□□ -0.6
VPS29-201ENST00000360579 GID8Q9NWU2 228 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 KCNG2Q9UJ96 466 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 AP3M1Q9Y2T2 418 aa11.32□□□□□ -0.6
VPS29-201ENST00000360579 ANKRD30BLA7E2S9 258 aa11.31□□□□□ -0.6
VPS29-201ENST00000360579 M0R1W7 72 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms